Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq34 129 7e-25 seq47 87.8 2e-12 >seq34 Length=329079 Score = 129 bits (142), Expect = 7e-25 Identities = 417/638 (65%), Gaps = 21/638 (3%) Strand=Plus/Plus Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024 ||| |||||||| | || || ||||| |||||||| || || ||||| | |||| Sbjct 277927 TAACCAAAAGAACCTCGGAGTCATCAAATCATCCAATCTTTGCACTGAAATTGTCGAATA 277986 Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 | ||||| || ||||| ||||| || || || | ||||| || | || | Sbjct 277987 CTCTTCTCCGGATGAAACTGCTGTCTGTAATCTTGCTTCCCTTGCTCTTCCAACCTACAT 278046 Query 105085 ------GGATCCAGA-GACAAAGACATTT---GATTATGAAAAACTCCACGAAGTTACGA 105134 |||| || | |||| |||| |||| | |||||||| || ||||||| Sbjct 278047 AGTGAAGGATGCATCTGGCAAAC-CATTCTACGATTTCCAGAAACTCCATGATGTTACGA 278105 Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGA 105191 |||| ||| | ||||| || | || |||||| | || | |||||| | |||| Sbjct 278106 AAACGGTCGCTTTCAACCTCAATCGCGTCATTGATCGCAACTACTACCCCATCCCTGAG- 278164 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251 || ||| |||||| ||| | ||||||| ||||| |||||||||| |||||||| | Sbjct 278165 --GCCCGTCGATCTAACATGCGTAACCGTCCCATTGGAATCGGTGTTCAAGGTCTCGCTG 278222 Query 105252 ATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCG 105310 | | ||||| | ||| | | | ||||| || |||||| |||||| |||| || Sbjct 278223 ACGCCTTCATGGCATTGAAGATGC-CTTTTGACTCGCCCGAAGCCAAGGAACTCAACACG 278281 Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370 || || ||||| || || || | |||| ||||||||||| || |||| || Sbjct 278282 AAGATTTTCGAGACAATTTACCATGGCGCTTGTGAGGCGAGTTGCGAAATGGCGAAGACG 278341 Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGAT 105430 ||||||||||| || || | |||| ||| ||| |||||| | || || ||| Sbjct 278342 GATGGTCCATACGAGACGTGGATGGGTAGTCCTGCTCAGCAAGGGCAATTGCAGTTCGAT 278401 Query 105431 ATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAA 105489 | |||| || | ||| | | || || |||||| | | | ||||| |||| Sbjct 278402 CTATGGG-GTGTTACACCTACCGATCTCTGGGACTGGAATACGTTGAAGGAGAGCATTTC 278460 Query 105490 GGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA 105549 || | || | | ||| || || | || |||||||| || ||||| || || Sbjct 278461 TAAGTATGGAATGAGGAACTCGCTGCTTACTGCACCAATGCCTACTGCCTCTACAAGCCA 278520 Query 105550 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 || | || || ||||||||||| || ||||||| Sbjct 278521 GATGCTCGGCTTCAACGAATGCTTTGAGCCTTACACGA 278558 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| || || | || || || || || || || || |||| Sbjct 277020 CCACAACATATGATCATGCGGGTCGCTGTTGGGATACACGGAGACGATATCGAGCATGTC 277079 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 ||| |||||| || |||||| | | ||| |||| ||| || || || || ||||| Sbjct 277080 TTGCGAACATACAACCTCATGTCCGAGCGATAT-TTCACTCATGCCACTCCCACTCTCTT 277138 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| ||||| || || ||||||||| ||||||||| | || || || || Sbjct 277139 CAATGCCGGTACCCCTTCGCCTCAAATGTCCTCATGCTTCCTTGTTTGCATGAAAGATGA 277198 Query 104401 CTCAATCAACGGTATCTA 104418 || ||| | |||||||| Sbjct 277199 TTCTATCGAAGGTATCTA 277216 >seq47 Length=266373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-C 94862 ||||| ||| | || ||||| |||||| || || ||||||||||| |||||| ||| | Sbjct 38080 GAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTC 38022 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC-TTCTCCAACGAGCTTA 94921 || | |||| | |||||||| || | ||||| || || || ||||| |||||||| | Sbjct 38021 CATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGG-CTTGGCGTTCTCAAACGAGCTCA 37963 Query 94922 TCTCTCGTGACGAGGG 94937 || |||||| ||||| Sbjct 37962 TCAGTCGTGATGAGGG 37947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258357595400