Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08]
335 sequences; 41,818,685 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq34 129 7e-25
seq47 87.8 2e-12
>seq34
Length=329079
Score = 129 bits (142), Expect = 7e-25
Identities = 417/638 (65%), Gaps = 21/638 (3%)
Strand=Plus/Plus
Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024
||| |||||||| | || || ||||| |||||||| || || ||||| | ||||
Sbjct 277927 TAACCAAAAGAACCTCGGAGTCATCAAATCATCCAATCTTTGCACTGAAATTGTCGAATA 277986
Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084
| ||||| || ||||| ||||| || || || | ||||| || | || |
Sbjct 277987 CTCTTCTCCGGATGAAACTGCTGTCTGTAATCTTGCTTCCCTTGCTCTTCCAACCTACAT 278046
Query 105085 ------GGATCCAGA-GACAAAGACATTT---GATTATGAAAAACTCCACGAAGTTACGA 105134
|||| || | |||| |||| |||| | |||||||| || |||||||
Sbjct 278047 AGTGAAGGATGCATCTGGCAAAC-CATTCTACGATTTCCAGAAACTCCATGATGTTACGA 278105
Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGA 105191
|||| ||| | ||||| || | || |||||| | || | |||||| | ||||
Sbjct 278106 AAACGGTCGCTTTCAACCTCAATCGCGTCATTGATCGCAACTACTACCCCATCCCTGAG- 278164
Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251
|| ||| |||||| ||| | ||||||| ||||| |||||||||| |||||||| |
Sbjct 278165 --GCCCGTCGATCTAACATGCGTAACCGTCCCATTGGAATCGGTGTTCAAGGTCTCGCTG 278222
Query 105252 ATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCG 105310
| | ||||| | ||| | | | ||||| || |||||| |||||| |||| ||
Sbjct 278223 ACGCCTTCATGGCATTGAAGATGC-CTTTTGACTCGCCCGAAGCCAAGGAACTCAACACG 278281
Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370
|| || ||||| || || || | |||| ||||||||||| || |||| ||
Sbjct 278282 AAGATTTTCGAGACAATTTACCATGGCGCTTGTGAGGCGAGTTGCGAAATGGCGAAGACG 278341
Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGAT 105430
||||||||||| || || | |||| ||| ||| |||||| | || || |||
Sbjct 278342 GATGGTCCATACGAGACGTGGATGGGTAGTCCTGCTCAGCAAGGGCAATTGCAGTTCGAT 278401
Query 105431 ATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAA 105489
| |||| || | ||| | | || || |||||| | | | ||||| ||||
Sbjct 278402 CTATGGG-GTGTTACACCTACCGATCTCTGGGACTGGAATACGTTGAAGGAGAGCATTTC 278460
Query 105490 GGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA 105549
|| | || | | ||| || || | || |||||||| || ||||| || ||
Sbjct 278461 TAAGTATGGAATGAGGAACTCGCTGCTTACTGCACCAATGCCTACTGCCTCTACAAGCCA 278520
Query 105550 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587
|| | || || ||||||||||| || |||||||
Sbjct 278521 GATGCTCGGCTTCAACGAATGCTTTGAGCCTTACACGA 278558
Score = 84.2 bits (92), Expect = 3e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
||||| | ||| ||||||| || || | || || || || || || || || ||||
Sbjct 277020 CCACAACATATGATCATGCGGGTCGCTGTTGGGATACACGGAGACGATATCGAGCATGTC 277079
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340
||| |||||| || |||||| | | ||| |||| ||| || || || || |||||
Sbjct 277080 TTGCGAACATACAACCTCATGTCCGAGCGATAT-TTCACTCATGCCACTCCCACTCTCTT 277138
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
|||||| ||||| || || ||||||||| ||||||||| | || || || ||
Sbjct 277139 CAATGCCGGTACCCCTTCGCCTCAAATGTCCTCATGCTTCCTTGTTTGCATGAAAGATGA 277198
Query 104401 CTCAATCAACGGTATCTA 104418
|| ||| | ||||||||
Sbjct 277199 TTCTATCGAAGGTATCTA 277216
>seq47
Length=266373
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-C 94862
||||| ||| | || ||||| |||||| || || ||||||||||| |||||| ||| |
Sbjct 38080 GAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTC 38022
Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC-TTCTCCAACGAGCTTA 94921
|| | |||| | |||||||| || | ||||| || || || ||||| |||||||| |
Sbjct 38021 CATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGG-CTTGGCGTTCTCAAACGAGCTCA 37963
Query 94922 TCTCTCGTGACGAGGG 94937
|| |||||| |||||
Sbjct 37962 TCAGTCGTGATGAGGG 37947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583258357595400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |