Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 190 2e-43 seq38 178 1e-39 seq34 93.3 5e-14 seq48 89.7 6e-13 >seq5 Length=946259 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | ||||| ||||| || || | ||||| ||||| Sbjct 884039 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTC 883980 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| ||||||| || || ||||| |||||||| || ||||| ||||| Sbjct 883979 TGATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 883920 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || |||||||| ||||| || || |||| || || || | || ||||| Sbjct 883919 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 883860 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| ||||||||||| || | |||||||| ||||| Sbjct 883859 TATCCAAAAAGAATCGACTCTTCATCTTGTTCTCCGTCTTCGTGGTGG 883812 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| ||||| || |||||||| || ||||| | Sbjct 883810 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 883751 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||| || || |||||||| ||||| Sbjct 883750 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 883691 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||||| |||||| || | |||||||| Sbjct 883690 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 883631 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || || |||||||| Sbjct 883630 ATTCAGAAAGAGTCTACCCTTCATCT 883605 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || || ||||| | || ||||| || |||||||||||||||| ||| || Sbjct 884161 ATTCCTCCTGATCAACAGCGATTGATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACT 884102 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || |||||||| ||||||||||| || | |||||||| ||| Sbjct 884101 CTTTCTGACTACAACATTCAGAAGGAATCTACTCTTCATCTTGTTCTTCGTCTTCGTGGT 884042 Query 27631 GGA 27633 ||| Sbjct 884041 GGA 884039 >seq38 Length=308705 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| |||||||| ||||||||||| Sbjct 189080 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 189139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 189140 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 189199 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| ||| || || | || || || Sbjct 189200 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 189259 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || |||||||| || Sbjct 189260 ATCCAGAAGGAGTCGACTCTTCACCT 189285 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||||||||||||||||| | Sbjct 188852 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 188911 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 188912 GACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 188971 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| | ||||||| ||| || || | || || ||| Sbjct 188972 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 189031 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || || || ||| | |||||||| || || Sbjct 189032 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 189078 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || ||||| || || ||| | ||||| ||||| Sbjct 188624 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 188683 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || ||||| |||||||| |||||||| || || Sbjct 188684 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 188743 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| || || || ||||| ||||| |||| || ||||| | ||||| || Sbjct 188744 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 188803 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || || || Sbjct 188804 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 188850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||||||||| || ||| | ||||| ||||| |||||||| ||||| | || || Sbjct 188215 ATTCCTCCAGACCAACAACGTTTGATTTTCGCTGGAAAGCAACTTGAGGACGGACGAACT 188274 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || ||||||| || ||||| || || |||||| | |||||||| || Sbjct 188275 CTCTCGGATTACAACATCCAAAAAGAGTCCACCCTCCACCTAGTCCTTCGTCTTCGTGGC 188334 Query 27631 GG 27632 || Sbjct 188335 GG 188336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| || || ||||| || ||||| || ||||| || ||||| ||||| |||| ||| | Sbjct 188499 GAATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGGA 188558 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | ||||| || | || ||||||||||| || || || ||| | ||||| || | Sbjct 188559 CCCTTTCCGACTACAACATTCAGAAGGAATCCACACTCCACCTTGTCCTTCGTCTCCGTG 188618 Query 27629 GTGG 27632 | || Sbjct 188619 GAGG 188622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||| |||||||| ||||| ||||||||||| | Sbjct 188053 ATGCAAATCTTCGTAAAGACCCTCACCGGGAAGACTATCACTCTCGAGGTTGAGTCCTCT 188112 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| | |||||||| || || || ||||| || Sbjct 188113 GACACTATCGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGG 188156 >seq34 Length=329079 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/318 (67%), Gaps = 21/318 (7%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||||||| || || ||||| ||||| | || || |||| ||| |||| || Sbjct 278233 CATGAAGGCGTCAGCGAGACCTTGAACACCGATTCCAATGGGACGGTTACGCATGTTAGA 278174 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| |||||| || || ||||| |||| ||| |||||||| || |||||| | Sbjct 278173 TCGACGGGCCTCAGGGATGGGGTAGTAGTTGCGATCAATGACGCGATTGAGGTTGAAAG- 278115 Query 80835 AACAACCCGT---GTAACATCATGAAGTTTCTGAAA---GTCGAATTGGTTCC------- 80881 | ||| | ||||||||||| |||||||| || || |||| | || | Sbjct 278114 --CGACCGTTTTCGTAACATCATGGAGTTTCTGGAAATCGTAGAATGGTTTGCCAGATGC 278057 Query 80882 --CCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 ||||||| | | | ||||| ||||| || ||||| || || || || || Sbjct 278056 ATCCTTCACTATGTAGGTTGGAAGAGCAAGGGAAGCAAGATTACAGACAGCAGTTTCATC 277997 Query 80937 AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTT 80996 | | | | ||||| ||||| ||||| | ||| || || || || || ||||| Sbjct 277996 CGGAGAAGAGTATTCGACAATTTCAGTGCAAAGATTGGATGATTTGATGACTCCGAGGTT 277937 Query 80997 TTTCTGGTTTGACTTGGC 81014 || ||||| || ||||| Sbjct 277936 CTTTTGGTTAGATTTGGC 277919 >seq48 Length=263890 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || ||||| || ||||||||||| ||| ||| ||||||||| |||| ||||| || Sbjct 116681 TGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGAAGCGCGG 116740 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||| || || | | ||| |||||||| ||| Sbjct 116741 CCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATC 116777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308011825200