Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 seq38 113 4e-20 >seq5 Length=946259 Score = 136 bits (150), Expect = 3e-27 Identities = 157/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || ||||||||||| || | || Sbjct 883810 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 883751 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| ||||| |||||||||||||| || ||||| ||| Sbjct 883750 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 883691 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || ||||| || || || |||| || || ||| Sbjct 883690 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 883631 Query 27168 ATTCAAAAGGAGTCGACCTTACAT-TTGGT 27196 ||||| || ||||| ||| | ||| ||||| Sbjct 883630 ATTCAGAAAGAGTCTACCCTTCATCTTGGT 883601 >seq38 Length=308705 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | |||||||| || || || |||| Sbjct 189080 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 189139 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 189140 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 189199 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| || || || |||||||||||||| Sbjct 189200 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 189259 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 189260 ATCCAGAAGGAGTCGAC 189276 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || ||||| | || ||| | || || || | || Sbjct 188623 CATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTC 188682 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || || || || ||||| || |||||||| Sbjct 188683 AGACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCA 188742 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || |||| | ||||||||| || | ||||| | ||| |||| || ||||| Sbjct 188743 ACAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAA 188802 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || | ||| | ||| | || || ||||| Sbjct 188803 CATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGGCAT 188853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916578779200