Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 178 3e-39 seq38 147 5e-30 >seq5 Length=946259 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| ||||||||||||| ||| ||||| | | ||| Sbjct 883817 ACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGT 883876 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 883877 GCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACC 883936 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||||||| ||||||| || ||||| || || | || || || || Sbjct 883937 CTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAA 883996 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||||||| || | || | |||||| Sbjct 883997 GGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 114 bits (126), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 225489 CTAACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA 225548 |||| |||| |||| |||| || || || || ||||| || | || || || | | Sbjct 883588 CTAAAGAAGACTCAC--CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAG 883645 Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || | ||||| || | |||||| ||||| ||||| | || ||||||||||| ||||| Sbjct 883646 CGTACGACCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAAT 883705 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||| ||||| || |||||| ||| ||| ||||| ||||| || | || || || Sbjct 883706 GCCTTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTC 883765 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | ||||||||||| || ||||| || || Sbjct 883766 AAGAGTGATCGTCTTTCCGGTCAATGTCTT 883795 >seq38 Length=308705 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||||||||| || || ||||| || | ||||||||| | | || Sbjct 189072 CGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTG 189013 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || | |||||| ||||| || || || ||||||||||| |||||||||||| Sbjct 189012 CGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCT 188953 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||| ||| || || ||||| || | || || || | Sbjct 188952 TCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGA 188893 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||||| | || || | ||| | ||||| Sbjct 188892 GTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 188852 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || || | ||||| || | | || | |||||| Sbjct 188835 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 188776 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| || Sbjct 188775 TCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 188716 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| |||||||| | || || || || |||||||| Sbjct 188715 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 188656 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | || | |||||| Sbjct 188655 TTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| |||||||||| |||||||| | | ||| Sbjct 188331 ACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAGAGAGT 188272 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || || || || || ||||| |||||||| || | ||||||||||| || ||||| Sbjct 188271 TCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAAT 188215 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| |||||||| || || | ||||| |||| | || | |||||| Sbjct 188607 AGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTCCGACCATCT 188548 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || ||||||||||| || || ||||| ||||||||||| || || || Sbjct 188547 TCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCAGGTGGGAT 188501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526081432490