Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq47 174 2e-38 seq48 111 2e-19 seq34 93.3 6e-14 >seq47 Length=266373 Score = 174 bits (192), Expect = 2e-38 Identities = 365/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 ||| | ||| ||||| | ||| || | ||||| || || | | || ||||||| ||| Sbjct 37940 ATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCC 37999 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 ||| || || | |||||| || | |||||| || ||||| ||||| |||||||| || || Sbjct 38000 ACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGC 38059 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGC 48331 ||||| || || | ||| ||| || | ||||| ||||| || | || Sbjct 38060 AGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTGATCCAGCGCAGAGC 38119 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| || ||||| ||| | ||||| || || || ||||||| ||| || || | Sbjct 38120 CCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACG 38179 Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 ||| ||||| | ||| || || || | |||| || | ||||||||||| || Sbjct 38180 TTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTT 38239 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 || || ||||| || ||||| || || | || || | || |||||| || | | Sbjct 38240 CTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACCTGTACTTCGTTCGA 38299 Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 || ||||| | |||||| || || || |||||| || ||||| || || | || Sbjct 38300 GAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAACGCGAGAAC 38359 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTT 48628 | | || || || |||| || | ||| | || |||||||||| | ||||| Sbjct 38360 ACGGGAGATGAAGAATCGTTCGCTGTCATTCAGGCGGTTGTTCCAGTCATGAAGGTCTTT 38419 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||||| ||| | ||||| || ||||| || || ||||| || || || ||||| | ||| Sbjct 38420 TGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCA 38479 Query 48689 TAT 48691 ||| Sbjct 38480 TAT 38482 >seq48 Length=263890 Score = 111 bits (122), Expect = 2e-19 Identities = 366/560 (65%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| ||| | ||||||||||| || || | ||||| ||| | || || Sbjct 116813 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 116754 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || || || || | ||| || || | ||||| || |||||||| || Sbjct 116753 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 116694 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG-TTGT--- 48315 || || || || || || ||||| | ||||||| | || | |||||| |||| Sbjct 116693 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 116635 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 |||||| | ||||| || || || ||| | || || ||||||||||| || | Sbjct 116634 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 116575 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 |||||| | || ||| ||| || ||||| ||||| || | ||| || Sbjct 116574 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 116515 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TG 48494 |||| || |||| ||||| || || || || || ||||| | | ||| || | || Sbjct 116514 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 116455 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || | |||| || || || ||| || || || || || ||| || Sbjct 116454 CT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 116396 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTG-GAAGTCAGTTTATT 48610 ||||| ||||| | || || | || |||| | || ||| | || | | || Sbjct 116395 GCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATC-GCTCGTT 116337 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | ||| | | | || | ||||| | ||||| || ||||| ||||| Sbjct 116336 CCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGC 116277 Query 48671 TTTTTTATACATATTCCATA 48690 ||| || ||||| | ||||| Sbjct 116276 TTTCTTGTACATCTGCCATA 116257 >seq34 Length=329079 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || |||||||||||| |||| ||| |||| | ||| || || || Sbjct 277593 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 277534 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | | ||||| | | | | ||||||| |||||| ||||| ||||| || Sbjct 277533 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 277474 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | ||||| || || ||||| || || || | ||||| || || ||| || Sbjct 277473 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 277414 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 | | | |||||| | |||||| || || ||||| || || | ||| ||| Sbjct 277413 GCCCGAAGCATTGGCACAATACCATTCGAGTACCCATTCGTGCCGGCAATGTAA 277360 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||||||||| || ||| |||||||| | | |||||||| |||||||| | Sbjct 278996 GTAAACTGAATTGCTTGAGCTGCAGGTTTTGTCCTCAAGTAGTACATGCCAGTTTTCAAT 278937 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGA---ATAACTAGGATCGGCT 76898 ||| |||| ||||||||||||||||| |||| || || || | | || ||| Sbjct 278936 CCCTTCTTCCACCCGTAGAAATGCATGCTCGTCAATT--GACCCAT-AGTTGGCGAGGCG 278880 Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | ||||| ||||| ||||||||| |||||| || || | ||||| || Sbjct 278879 AGATGAACATTCAAACTCTGACTTTGGCAGATGAACGCGCCACGGTCAGCAGC 278827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665891074400