Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq48 145 1e-29 seq34 87.8 3e-12 >seq48 Length=263890 Score = 145 bits (160), Expect = 1e-29 Identities = 374/561 (67%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || ||||| ||| | |||||||||| || || | ||||| ||| | || || Sbjct 116813 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 116754 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || || ||||| || | ||| || || | ||||| || |||||||| || Sbjct 116753 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 116694 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---G 46805 || || || ||||| |||||||| || | ||||||| | || || | || || | Sbjct 116693 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTG-CTTCGTTTGTCAG 116635 Query 46806 A-ATCCACCTTTGAG--CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| |||||| |||| || || || ||| | || || ||||||||||| || Sbjct 116634 ATATCCA--TTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 116577 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 | |||||| | || || | ||| || || |||||||| || | ||| || Sbjct 116576 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 116517 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||| ||||||| |||||| || || || || || ||||| | | || |||| Sbjct 116516 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 116457 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 || || || | |||| || || ||| ||| || ||||| || || ||| || Sbjct 116456 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 116397 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCATCG-GTAGTCAGTTTAT 47098 ||||| ||||| | || || | || |||| | |||| | || || | | | Sbjct 116396 GGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATC-GCTCGT 116338 Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158 ||||||| | ||| | | | || | ||||| | |||||||| || || |||| Sbjct 116337 TCCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTG 116278 Query 47159 CTTTTTTATACATATTCCATA 47179 |||| || ||||| | ||||| Sbjct 116277 CTTTCTTGTACATCTGCCATA 116257 >seq34 Length=329079 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 |||||||| || |||||||||||| |||| ||| |||| | ||| || || || Sbjct 277593 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 277534 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||| | | ||| | | | | | ||||||| |||||| ||||| ||||| || Sbjct 277533 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 277474 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | | || || || || ||||| || || || | ||||| ||||| ||| || Sbjct 277473 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 277414 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTA-CCATTTGTTCCAGAAATATAA 76843 | | | |||||| | ||| || || || ||| ||||| || || | ||| ||| Sbjct 277413 GCCCGAAGCATTGGCACAATACCATTCGA-GTACCCATTCGTGCCGGCAATGTAA 277360 Score = 84.2 bits (92), Expect = 3e-11 Identities = 208/313 (66%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 ||||| || || || ||| ||| | ||||||| ||||| || || ||||| || Sbjct 277267 CCTATGCCACCGGCTGATTTGCTGATCAAAGCACAGTTTTTCAGGGTATCGTAGATACCT 277208 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || ||| |||||| ||||| || ||| || || ||||||||| | | || Sbjct 277207 TCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGCGAAGGGGTA 277148 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||| || | || |||| ||||||||||| || || || | || |||||| Sbjct 277147 CCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAAATATCGCTCGGACATGAGGTTGTAT 277088 Query 77057 GTT-TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 ||| ||| | ||| || ||||| | || || || |||||||| ||||| | ||| Sbjct 277087 GTTCGCAAGACATGC-TCGATATCGTCTCCGTGTATCCCAACAGCGACCCGCATGATCAT 277029 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||| || || || || || | | || | | | |||||| |||||| || Sbjct 277028 ATGTTGTGGCCGCTCAGCAATACGACCGTTAAGGCGAATGAGGTATGACCGTTCCAAGGT 276969 Query 77176 TTTAAAACCAAAA 77188 |||||| |||||| Sbjct 276968 TTTAAATCCAAAA 276956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931414587200