Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq38 109 1e-18 seq5 109 1e-18 >seq38 Length=308705 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || |||||||||||||||| | || | ||||| || | Sbjct 189287 CAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCA 189228 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | ||||||||| | || || || ||||| || || | Sbjct 189227 ACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGA 189168 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | |||| || ||| || || |||||||| || || | Sbjct 189167 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTC 189108 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| |||||| Sbjct 189107 CTGTGAGGGTCTTGACGAAGATCTGCAT 189080 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || || |||||||| || | | || | |||||| Sbjct 188835 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 188776 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | || || || | | || || ||||| || Sbjct 188775 TCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 188716 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | |||||||| ||| || || | ||| || ||| Sbjct 188715 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 188656 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || |||| ||||| Sbjct 188655 TTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 >seq5 Length=946259 Score = 109 bits (120), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||||||||| || ||||||||||| || ||||| | | ||| | ||||| Sbjct 883826 GAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATC 883885 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 |||||| ||||| || || |||||||| | || ||||| | | ||| || ||||| Sbjct 883886 TTCTAGCTGCTTT--CCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTA 883943 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || ||| || ||| | || | | | || || ||| || || | || || Sbjct 883944 TCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATG 884003 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | |||||| || |||| ||||||| Sbjct 884004 GTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 104 bits (114), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||||||||| ||||||||||| || ||||| || || | | || | ||||| || | Sbjct 883603 CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCA 883662 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || || ||||| | | ||| ||||| | | || ||||| || || || Sbjct 883663 ACTGCTTT--CCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTG 883720 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| ||| |||||| | || | |||| ||| ||| ||||||||||| || || || Sbjct 883721 AATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTT 883780 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||||| |||| |||||| Sbjct 883781 TCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815847584785