Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 178 3e-39 seq38 168 1e-36 seq47 113 9e-20 seq3 89.7 1e-12 seq135 86.0 1e-11 >seq5 Length=946259 Score = 178 bits (196), Expect = 3e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||| ||||||| |||||| || |||||||| | || || || |||||| Sbjct 883620 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 883679 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| |||||||| ||||| || || ||||| || |||||||| || || | Sbjct 883680 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 883739 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct 883740 TCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTCTTCACA 883799 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 883800 AAGATCTGCAT 883810 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | || |||||||||||| || || || | | Sbjct 883812 CCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 883871 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| || || || |||||||| | ||||||||||||| || Sbjct 883872 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 883931 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || ||||||||||| || || | || || || || || | ||||| Sbjct 883932 ATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACC 883991 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||| ||||| || ||||||||||| || || ||||||||| Sbjct 883992 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | || ||| || || ||||||||||||| | Sbjct 884040 CCACCACGAAGACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 884099 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || |||||||||||||| || ||||| ||| ||| Sbjct 884100 AGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGA 884159 Query 282993 AT 282994 || Sbjct 884160 AT 884161 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||||||||||||||| ||||| || | || |||||||| |||| ||| || || Sbjct 884224 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 884283 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| || || | ||| || |||||||| ||||| Sbjct 884284 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCAT 884327 >seq38 Length=308705 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| || || || | || ||||| || || ||||| |||| Sbjct 189079 ACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGA 189020 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| |||||||| | || || || ||||| || | ||||||||||||| ||| Sbjct 189019 AAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGG 188960 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||| || || || || | || |||||||| || | || || Sbjct 188959 AATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAAC 188900 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 188899 CTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 188852 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||||||||| |||||||| | || || || ||||| Sbjct 189270 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 189211 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || |||||| |||||| ||||||||||| |||||||| || ||||| | Sbjct 189210 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 189151 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||| | || || || ||||| |||||||| || || | ||||| ||| Sbjct 189150 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACG 189091 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 189090 AAGATCTGCAT 189080 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | || || || || ||||||||||||| | Sbjct 188850 CCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAA 188791 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || ||||| ||||| | |||||||| || ||| Sbjct 188790 AGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGA 188731 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 188730 ATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACC 188671 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || ||||| | |||||||| || || ||||| Sbjct 188670 TCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | ||| ||||||||||||||||| || | Sbjct 188337 ACCGCCACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGA 188278 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || || || ||||| ||||| || || || || ||||||||||||||||| Sbjct 188277 GAGAGTTCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTC 188224 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| |||| ||||||||||| || || || | ||||||||||| || | || || Sbjct 188159 TACCCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCGATAGTGTCAGAGGACTCAACC 188100 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 188099 TCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTTACGAAGATTTGCAT 188053 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | ||| ||| || || ||||||||||| | | Sbjct 188622 CCTCCACGGAGACGAAGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAA 188563 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || || ||||| || || || ||||| ||||| || | ||||||||||||| Sbjct 188562 AGGGTCCGACCATCTTCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCA 188509 >seq47 Length=266373 Score = 113 bits (124), Expect = 9e-20 Identities = 133/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||||||||| || | ||| | ||||||||||| ||||| || ||||| | || Sbjct 37757 ATCGGCATGAACGCGACATTGATGTGTCAATATATCGAGTTCGTTGCCGATCGACTACTC 37698 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || || || || |||| |||| ||||| | ||||||||||| |||||||| | Sbjct 37697 GTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACATG 37638 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || || || || ||||| || ||||| || || ||||| || |||||| |||||||| Sbjct 37637 ATCTCGCTTCAAGGGAAGACCAACTTTTTTGAGAAGCGGGTGTCCGATTACTCAAAGGC 37579 >seq3 Length=995293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 |||||||||| || | ||| ||| || || ||||| ||||| | ||| || || ||| Sbjct 452114 CGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCCA 452173 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATAC 282996 || || ||||| || ||||| ||||||||||||||||| ||| ||||||| Sbjct 452174 TCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAATAC 452225 >seq135 Length=87882 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 274671 GCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCCG 274730 || ||||||||||||||||||||||| ||||| || || |||||| | | | ||||| Sbjct 30521 GCTTCACGTACGTTCAGCAACTTACCTCGGAGGGGAAAGACGCCAAAATTGTTACGCCCT 30462 Query 274731 ATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAA 274790 | || ||||| || ||||| || | | || |||||||| ||||| |||||||| Sbjct 30461 ACCACTCCGAGACCAGCAATCGCAAGTGCTTTGGCGGAATCTCCTTCTGTAAGAATCAAT 30402 Query 274791 GTACA 274795 || || Sbjct 30401 GTGCA 30397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734707199090