Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq38 145 5e-30 seq5 91.5 1e-13 >seq38 Length=308705 Score = 145 bits (160), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| ||||||| || |||||| |||||||||||||||| || ||| | || | Sbjct 189290 CACCAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCT 189231 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| || ||||| || | ||||||||| || | || | || ||||| ||| Sbjct 189230 CCAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCT 189171 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||| || ||| | |||||||| | || || ||||||| |||||||| Sbjct 189170 GGATCTTCGCCTTTACATTGT--CAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGT 189113 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| ||||||||||| |||||||| ||||| Sbjct 189112 CTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 189080 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || |||||||| || | || ||| | || || Sbjct 188832 ACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCG 188773 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | || || ||||| | ||| | || ||||| ||| | Sbjct 188772 AGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGT 188713 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | || || ||||||| || ||||| || Sbjct 188712 ATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTG 188653 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||| || |||||||||||| Sbjct 188652 CCCGTGAGGGTCTTAACAAAGATTTGCATG 188623 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||| || || || |||||||| | || ||| | || ||| Sbjct 189060 ACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCC 189001 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || ||||| || | ||| || || || | || | ||||||||| ||| Sbjct 189000 AACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGG 188941 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||| || ||| | || ||||| | || || ||||| | || ||||||| Sbjct 188940 ATTTTCGCCTTAACATTGT--CAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCT 188883 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||| ||||| |||||||| |||||| Sbjct 188882 TTCCCGTGAGTGTCTTGACGAAGATCTGCATG 188851 >seq5 Length=946259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 44128 CACCAGG-TGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| | ||||| || ||| || || ||||| || || | || || | || | Sbjct 883600 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 883659 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| || ||||||||||||||||| || || | ||| | ||||| || ||| Sbjct 883660 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 883719 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | || ||||| | || || || || | || ||||| Sbjct 883720 GAATCTTTGCCTTGACATTGT--CGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGT 883777 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || | |||||||| ||||| ||||| Sbjct 883778 CTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988930226695