Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq38 152 1e-31 seq3 87.8 4e-12 >seq5 Length=946259 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || |||||| | ||||| || || || Sbjct 884035 CAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCTGAT 883976 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| ||||| || || || |||||||| ||||| ||| Sbjct 883975 ACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAACAA 883916 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || ||||| ||||| |||||||| | |||||| | |||||||| || Sbjct 883915 CGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAATATC 883856 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||||||| Sbjct 883855 CAAAAAGAATCGACTCTTCATCTTGTT 883829 Score = 136 bits (150), Expect = 1e-26 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || ||||| |||||||| || || || || || ||| Sbjct 883807 CAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCTGAC 883748 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||||||||||||| || ||||| ||||| || Sbjct 883747 ACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAACAG 883688 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||| | || ||||| | || ||| | || |||||| | Sbjct 883687 CGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAACATT 883628 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || ||||||| Sbjct 883627 CAGAAAGAGTCTACCCTTCATCTTG 883603 >seq38 Length=308705 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||||||||| | ||||| || |||||| Sbjct 188627 CAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCAGAC 188686 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| ||||| || || || || ||||| || || ||| Sbjct 188687 ACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAACAA 188746 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| || ||||||||||||||| | || ||| | || || ||| | Sbjct 188747 CGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAACATT 188806 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || || |||||| Sbjct 188807 CAGAAGGAGTCAACCCTTCACCTTGTT 188833 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| ||||| || || ||||| || || ||| Sbjct 189083 CAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCGGAC 189142 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| || || || || || |||||||| Sbjct 189143 ACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 189202 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || ||||| | || ||| ||||||| ||| || Sbjct 189203 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAACATC 189262 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 189263 CAGAAGGAGTCGACTCTTCACCTTG 189287 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 ||||||| || ||||| ||||| ||||| || || || || |||||||||||||| ||| Sbjct 188499 GAATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGGA 188558 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||| |||| || ||| | || || ||||| ||||| || ||||| Sbjct 188559 CCCTTTCCGACTACAACATTCAGAAGGAATCCACACTCCACCTTGT 188604 >seq3 Length=995293 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || ||||| || || ||||| | |||||||||||||| || |||||||||||| | ||| Sbjct 452223 ATTCCTCCTGATCAACAACGTTTGATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACT 452164 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||| |||||| | || || ||||| || || || |||| Sbjct 452163 CTTTCCGACTATAACATTCAGAAGGAATCGACGCTCCA-CTTG 452122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726033359990