Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq38 141 9e-29 seq5 102 8e-17 >seq38 Length=308705 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || || || || || ||||||||||||||| ||||| || Sbjct 188851 GCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGA 188792 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || |||||||||||||||||||| || || || ||||| || | || Sbjct 188791 AAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGG 188732 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| || | || || | ||| | | | ||||| ||||| | Sbjct 188731 AATGCCCTCCTTATCC-TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGA 188673 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || |||||||| ||||| || ||||| || || || |||||| Sbjct 188672 CCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCATG 188623 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||||||||||| |||||||| Sbjct 188623 GCCTCCACGGAGACGAAGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGA 188564 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||| || | || ||||||||||| || || ||||| || || |||||||| Sbjct 188563 AAGGGTCCGACCATCTTCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTC 188510 >seq5 Length=946259 Score = 102 bits (112), Expect = 8e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| |||| || || ||| ||||||||||||||||| || || || || | || | Sbjct 883600 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 883659 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | | |||||| || || || |||| ||||||||||| | |||| || || |||||| Sbjct 883660 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCC- 883718 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | ||||| | || | | | |||||| ||||| || || | || ||||| Sbjct 883719 TGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTC 883778 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| ||||| || || |||||||| Sbjct 883779 TTTCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||||||||| ||||| || Sbjct 884040 CCACCACGAAGACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 884099 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||| ||||| ||||| || |||| |||||||| || | ||| Sbjct 884100 AGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGA 884159 Query 41756 ACGCT 41760 | ||| Sbjct 884160 ATGCT 884164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302064102000