Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2556 178 1e-39 seq886 138 1e-27 seq1520 120 3e-22 >seq2556 Length=115598 Score = 178 bits (196), Expect = 1e-39 Identities = 312/452 (69%), Gaps = 2/452 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||||||| |||||| || || |||| |||||| || ||||| ||| | || Sbjct 98483 AGACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTT 98542 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||||||||| || || | ||||||||||||||||| Sbjct 98543 AGGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAA 98602 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC-TTTGTT 17139 || || |||||||| | || || || | |||| || || | || || || ||||| Sbjct 98603 AAGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTC 98661 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||| | |||| |||||||| |||| ||||| || |||||||| || Sbjct 98662 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 98721 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | | | || | || || | | || |||||||| || || ||| Sbjct 98722 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 98781 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||| || || | ||| ||||| ||| || || || |||||| | || || || || Sbjct 98782 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 98841 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||| ||||| | || || ||| ||||||||||||||||| ||||| || Sbjct 98842 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 98901 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 ||| || || || | | ||| | ||||||| Sbjct 98902 GGCAAAGAATGCAAGGACATGGGTGATGAAAT 98933 >seq886 Length=61200 Score = 138 bits (152), Expect = 1e-27 Identities = 372/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| ||| | ||||| || | ||||| || ||||| || || | | Sbjct 12509 AGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCC 12450 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || ||||| ||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 12449 AAGCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAG 12390 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | || ||| || | || || | | | Sbjct 12389 AAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCA 12330 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | ||||| | | |||||||||| || |||| |||||| || || || || || Sbjct 12329 CTGATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCA 12270 Query 17201 TTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||| | | || | || | | |||| | || || || |||||||| || || Sbjct 12269 TCAAAAAGGAAATCACGTTCGACAG--GGTCTTTGATGTATGTGTCGATGAGAAGAGAGT 12212 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 | | || ||||| ||||||||||| ||||| || ||||| ||||| || || || | Sbjct 12211 AAGTCTCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAG 12152 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | || ||||| |||| ||||| ||||| ||||| || ||||| || | Sbjct 12151 CGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGG 12092 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG- 17436 |||| || ||||| | | | | ||||| | |||| || ||| | | ||| Sbjct 12091 CGGCAAAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGG 12036 Query 17437 -----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 |||||| | | ||||| |||| ||||| ||||| | ||||| ||| ||| Sbjct 12035 TTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCC 11976 Query 17492 ACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 11975 TCGGCCTTCTTGTACATTTGCCATAT 11950 >seq1520 Length=48961 Score = 120 bits (132), Expect = 3e-22 Identities = 298/443 (67%), Gaps = 12/443 (3%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 || || || ||||| || ||| || | ||| || || | ||||||||||||||| ||| Sbjct 6181 AAGATAAGGCATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAA 6240 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||||||| |||| ||| ||||| || | ||||||||| ||||| || || Sbjct 6241 AAGGTCAACCCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCG 6300 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || || || || || |||| || || || || | | |||||| || |||| | | Sbjct 6301 GAGAAAAAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTGA 6360 Query 17135 TTGT-TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | || | || |||||| | | |||| | |||||||| || |||||| |||||||| Sbjct 6361 TCGTCTTCG-ATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTC 6419 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG--TCGATTATATACGTATCGATGAGT 17251 || | | || || | ||| | ||| || |||||||| | || || Sbjct 6420 GATAGAACTGAACAAGAATGATCGTTC--GAAGGGATCTTGGATATACGTTTGAATCAGC 6477 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | ||| |||| || || ||||| ||||| | ||| ||||| || ||| |||| Sbjct 6478 AAAGAGTAAGTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGA 6537 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCG---CTAGATTTTCGTTCACGATG 17368 || || || | |||| || ||| |||| || || | || |||||||| || || Sbjct 6538 GCCTCAGCGACCTGAA-TTTCAC-TAGAGAAGTGACGGATCAAG-TTTTCGTTTACAATA 6594 Query 17369 CCGTCGCTCGCGGCGAAAAACGC 17391 |||||| ||| |||||||| || Sbjct 6595 CCGTCGGACGCAGCGAAAAATGC 6617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525913859240