Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2440 156 5e-33 seq1520 98.7 1e-15 seq1379 84.2 3e-11 >seq2440 Length=22844 Score = 156 bits (172), Expect = 5e-33 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 ||||| ||||| ||||| ||| ||| | ||||| || | ||| || | ||| || || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 ||||| || || ||||| || || | || || | ||| || || | |||||||| | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 ||| || || | ||| || || || ||||| || | || | ||| || ||| | | Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCA-AACGTATGAT 14362 Query 24305 --GTC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | | || ||||| || |||||| || || || | | |||| || || | Sbjct 14361 TGGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGTTT 14302 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--A 24418 | || || ||| | | ||||| || | | | || ||| || | || | | Sbjct 14301 CGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAGCA 14242 Query 24419 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 24478 |||| |||||| ||||||||||| ||||| || |||||||| ||||||||||| | Sbjct 14241 AAGA--ATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACG 14184 Query 24479 AGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 24538 ||| || | || | || || |||||| | | | |||| |||||||| || || || Sbjct 14183 AGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACC 14124 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTT 24596 ||| || ||||| ||||| | ||| | | || | ||| || | || Sbjct 14123 GTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAG 14064 Query 24597 AGTT-TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 || | ||||||| || ||| | ||||| || | |||||||||||||||||||||||| || Sbjct 14063 AGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGA 14004 Query 24656 TGCCTCTGCCTTTTTATACA 24675 |||| | |||||||| |||| Sbjct 14003 TGCCACAGCCTTTTTGTACA 13984 >seq1520 Length=48961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 371/571 (65%), Gaps = 22/571 (4%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| || ||| ||| | || || || | || || | |||||| ||||| || | Sbjct 6190 CATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAAC 6249 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || |||| || ||||| ||||| | |||||||||| |||| || ||||| || || ||| Sbjct 6250 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 6309 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACCGGCGCTGTCATG 24310 |||||||| | || | || |||| |||| ||| || |||| | | ||| | Sbjct 6310 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTGATC-GTCTTC 6368 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| || | ||||| | || || | ||| | ||||| || || || |||| | | Sbjct 6369 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 6428 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATAC 24428 || | | | ||| ||||| | ||| || | ||||| ||||| || Sbjct 6429 GAACAAGAATGATCGTTCGAAGGGATCTTGGATATACGTTTGAATCAGCAAAGA--GTAA 6486 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATT---TGAAATCCGTAGAAACATCTAGCCTCG 24485 |||| ||||| |||||||| || |||| || ||||| ||||| ||| |||||| Sbjct 6487 GTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTCA 6543 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCT-AAATTTTCATTCACTATTCCGTCACT 24544 | | ||| | ||| || | || | | | | || ||||| || || || ||||| Sbjct 6544 GCGACCTGAATTTCACTAGAGAAGTG-ACGGATCAAGTTTTCGTTTACAATACCGTCGGA 6602 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG-GT--GTTAGTTT 24601 || || ||||| || | ||| | | ||| | |||| || || | | || Sbjct 6603 CGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTT 6662 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||||| || | | ||| || || | || | |||||| ||||| || || ||||| Sbjct 6663 GTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGCCTC 6722 Query 24662 TGCCTTTTTATACATATTCCAGA--TGTCAT 24690 || ||||| ||| | ||||| |||||| Sbjct 6723 AGCTTTTTTGTACCTTCGCCAGATCTGTCAT 6753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23859 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT 23918 || || ||||| |||||||| ||||| ||||| | ||||| | ||||||||||| | Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 23919 GGATTGGTAACATTATAGATTCTTTTAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 23977 || || | ||||| || | | || | |||||| | || || || || ||| || | Sbjct 5921 GGGTTCCTGACATTGTATAAT-TTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 23978 AAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 24037 ||||| || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 54037 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 |||| || | ||| |||||||| ||||| ||||| || | |||| |||| || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 54096 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 | || || | | | ||| | || || ||| | || || | |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||||||| | ||| |||| |||||| || || Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA 1704 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 53396 TCGTATGGTCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 |||||||| || || ||||| || | ||| ||||||||||| | ||||| | |||| Sbjct 2674 TCGTATGGACCGCATT--TTCTC-GCGATTTCGCAACTCGCCTCACAGGCACCATGATAA 2618 Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 53512 || |||||||| |||| | ||||| | || |||||| | ||| ||||| ||| Sbjct 2617 ATCGTTTCGAATATCTGGATGTTTAGCTGTTTTGCTTCAACCGAATCGAATGGCATCTTT 2558 Query 53513 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 || | ||||| | || || | ||||| ||||||||||| || || Sbjct 2557 AACACCATAAAGACATCGGCAAGACCTTGCACACCAATACCAATGGG 2511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699016314640