Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq886 185 1e-41 seq2556 168 8e-37 seq2440 161 1e-34 seq1520 114 2e-20 seq1379 98.7 1e-15 >seq886 Length=61200 Score = 185 bits (204), Expect = 1e-41 Identities = 386/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| |||| |||||| || | ||| || | ||||| || |||| | Sbjct 12506 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 12447 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| |||||||| || | |||||| ||||| ||||| || || || ||||| Sbjct 12446 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 12387 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33758 || ||||| || ||||||||||| | || | ||| || | ||||| | ||| ||| Sbjct 12386 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCACTG 12327 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 12326 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCA 12267 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 12266 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 12207 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 12206 TCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 12147 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | || ||||| | ||| || || || || |||||| ||| ||| Sbjct 12146 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGCA 12087 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 34054 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 12086 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 12028 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 12027 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 11968 Query 34115 TTTATACATATTCCAGATGTCATGATAT 34142 || ||||| | ||| || | || |||| Sbjct 11967 CTTGTACATTTGCCATATCTGAT-ATAT 11941 >seq2556 Length=115598 Score = 168 bits (186), Expect = 8e-37 Identities = 373/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||||||| || | ||| || |||| || || | ||||| ||| | || || Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| ||||| || | ||| || ||||||||||| || || ||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33757 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 98664 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 98665 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 98724 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 98725 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 98784 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 98785 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 98844 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 |||||||| | |||| || || | |||||| ||||| || || ||| ||| || Sbjct 98845 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 98904 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 34054 ||| || || | ||||| | || |||| ||||| | || | | | | ||||| Sbjct 98905 AAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 98964 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 98965 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 99024 Query 34115 TTTATACATATTCCA 34129 || ||||| | ||| Sbjct 99025 CTTGTACATCTGCCA 99039 >seq2440 Length=22844 Score = 161 bits (178), Expect = 1e-34 Identities = 389/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 33551 CGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33610 |||| |||||||| | ||||| ||||| ||||| ||| ||||| ||||| || Sbjct 14561 CGGTTTATGTAATAGCAGACCAAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATC 14502 Query 33611 TCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33670 | ||| || | ||| || ||||||| || || ||||| || || | || || | ||| Sbjct 14501 ACGACTGATGAGTTCATTTGAAAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCA 14442 Query 33671 AAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || | || ||||| | || || |||| ||| || || || ||||| || | || Sbjct 14441 GAAGATTGCGGCAAATGAACTAGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAG 14382 Query 33731 TCTCTCTCCATAACCGGCGCT--GTC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCT 33786 | || || ||| | | | | || ||||| || |||||| || || | Sbjct 14381 CCGTTCCGCA-AACGTATGATTGGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTAT 14323 Query 33787 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 33846 | | | |||| || ||||| ||||| ||| | | ||||| || | | | Sbjct 14322 TGGCAATAGAAGGGATGGTTTCGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGG 14263 Query 33847 TAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 33904 || ||| || | ||| | ||||| |||||| ||||||||||| ||||| || || Sbjct 14262 GAATATAGGTTTGGATAAGCAAAGA--ATACATCTCCGAATGAATATTTTCCATCATGAT 14205 Query 33905 CTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC 33964 ||||| ||||||||||| | ||| || | || | || || | |||||| | | | | Sbjct 14204 TTGAAAGCCGTAGAAACAACGAGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTAC 14145 Query 33965 TAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||| |||||||| || || || || || ||||| ||||| | ||| | | || Sbjct 14144 TAAGTTTTCATTGACAATACCGTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAA 14085 Query 34025 ATATTTTTCGTC--TGGTGTTAGTT-TATTCCAATCATTGATATCTTTAGATATATCCAC 34081 | ||| || | || || | ||||||| || ||| | ||||| || | |||||| Sbjct 14084 GTGACGTTCATCATTATTGAGAGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCAC 14025 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 |||||||||||||||||| |||||| | |||||||| |||| Sbjct 14024 TTCTTCCACTGTCCAAAAAGATGCCACAGCCTTTTTGTACA 13984 >seq1520 Length=48961 Score = 114 bits (126), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33306 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33365 || || ||||| |||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 33366 GGATTGGTAACATTGTAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 33424 || || | |||||||| | ||| || |||||| | || || || || ||| || | Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 33425 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGC 33484 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 63275 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGT 63333 |||| || | ||| |||||||| ||||| ||||| || | ||||| |||| || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 63334 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 | || || | | | ||| | || || ||| | || || | |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||||||| | ||| |||| ||||||||| || Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793643313040