Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2556 147 2e-30 seq2440 107 2e-18 seq1379 104 2e-17 seq777 84.2 2e-11 >seq2556 Length=115598 Score = 147 bits (162), Expect = 2e-30 Identities = 249/358 (70%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 |||||| ||||| |||||||||||| |||| || || || || || ||| | |||| Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| || || || |||| ||| || || | ||| || || |||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTG-TTGCTAGA 11805 |||||||| ||||| || ||||| || | ||| ||| || | | | | | ||| ||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 98664 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||||||| |||||| || ||||| || | ||| ||||||||||| |||| Sbjct 98665 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 98724 Query 11866 AAATAAAT----GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | || || || | || ||| | || |||||||| || | | | | Sbjct 98725 GAAGAGATATGCGCGTTGAT----TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGT 98780 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 | |||| ||||||| |||||||| |||||| || ||||| || | || ||||| Sbjct 98781 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTC 98838 >seq2440 Length=22844 Score = 107 bits (118), Expect = 2e-18 Identities = 370/575 (64%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679 ||||| |||||| || || || || | || || || | ||| || |||||||| || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739 ||| | | || ||||| | || | ||| || | ||| || || || |||||||||| Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTT 11799 ||| || || | |||||| |||||||||||||| || | | ||| || | | || Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCAAACGTATGATT 14361 Query 11800 GCTAGA---TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTC 11856 | || |||||||| ||||| ||||| || | | || ||||| Sbjct 14360 GGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGTTTC 14301 Query 11857 TATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916 || ||| |||||| || ||| || | | | | ||| || | || | || Sbjct 14300 GATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAGCAA 14241 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 | |||||| || ||||||||||||||||| |||||||| || |||||||| || || Sbjct 14240 AGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACGAGC 14181 Query 11977 CTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 || | | | || || ||||| | |||| || ||||| |||||||| || Sbjct 14180 TTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACCGTC 14121 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---A 12093 | ||||| || || | | | | | |||| ||| || ||| | | Sbjct 14120 CGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAGAGC 14061 Query 12094 TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 | ||| ||| || | ||||| || | ||| |||||||| || ||||||||| ||| Sbjct 14060 TGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGATGC 14001 Query 12154 CACTGATTGTTTATACATTTTCCAGA--TATCATG 12186 ||| | | ||| |||| || ||| | ||||||| Sbjct 14000 CACAGCCTTTTTGTACAGTTCCCAAATCTATCATG 13966 >seq1379 Length=51093 Score = 104 bits (114), Expect = 2e-17 Identities = 162/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| ||| |||| ||||| | || || | |||||||| || ||| ||||||||||| Sbjct 3326 TCAATTGTAAATTGAATAGGTTCTGCGGCTGCTTTTGTTCGCAAATAGTACATTCCAGTC 3267 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTT---TTG-CGTATGTAGG 36905 || | ||| ||||||| || || |||||||| |||| || ||| |||| || | Sbjct 3266 TTCAAGCCCTTCTTCCATCCATAGAAGTGCATACTTGTCAATTGACTTGTCGTAGGT--G 3209 Query 36906 ATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGC 36965 || || |||||| || | |||||||||| ||||||| || | ||||||||| Sbjct 3208 ATGCAAAATGGATATTGACACT--TTGACTTTGACAAATAAACGGCCCACGGTCGGCTGC 3151 Query 36966 CATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATAT 37013 | || | ||| ||| ||||| || |||||||| || |||| || Sbjct 3150 TAGATCGAGAATCGTTTTCTGAGAAATTTCCCAAACGGTCCTATAGAT 3103 >seq777 Length=200876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATAC 38353 |||||| ||||| || || |||| | || ||||| || | ||| | ||||| | |||| Sbjct 114956 TCCTATGCCACCGGC-TGATTTGCTGATCAAAGCACAGTTTTTCAGGGTATCGTAGATAC 114898 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| ||| ||||| || || | | || || |||||||||||| | || | Sbjct 114897 CTTCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGCGAAGGGG 114838 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | ||||| || || | || |||| ||||| |||| || || |||| || | Sbjct 114837 TACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAAATATCGCTCGGACATGAGGTTGT 114778 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 |||||| | |||| || ||||| | ||||| || || | || |||| ||| | || Sbjct 114777 ATGTTTGCAAGACATGCTCGATATCGTCTCCGTGTATCCCAACAGCGACCCGCATGATCA 114718 Query 38534 TATGTTGTGG 38543 |||||||||| Sbjct 114717 TATGTTGTGG 114708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506978487920