Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2440 156 6e-33 seq1520 98.7 1e-15 seq1379 93.3 6e-14 >seq2440 Length=22844 Score = 156 bits (172), Expect = 6e-33 Identities = 373/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 ||||| ||||| ||||| ||| ||| | ||||| || | ||| || | ||| || || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 ||||| || || ||||| || || | || || | ||| || || | |||||||| | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 36327 ||| || || | ||| || || || ||||| || | || | || || | | | Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCAAACGTATGATT 14361 Query 36328 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | | || ||||| || |||||| || || || | | |||| || || || Sbjct 14360 GGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGTTTC 14301 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AA 36442 || || ||| | | ||||| || | | | || ||| || | || | || Sbjct 14300 GATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAGCAA 14241 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 ||| |||||| ||||||||||| ||||| || |||||||| ||||||||||| | | Sbjct 14240 AGA--ATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACGA 14183 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 || || | || | || || | |||||| | | | |||| |||||||| || || ||| Sbjct 14182 GCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACCG 14123 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTA 36620 || || ||||| ||||| | ||| | | || | ||| | || || | Sbjct 14122 TCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAGA 14063 Query 36621 G-TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 | | ||||||| || ||| | ||||| || | |||||||||||||||||||||||| ||| Sbjct 14062 GCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGAT 14003 Query 36680 GCCTCTGCCTTTTTATACA 36698 ||| | |||||||| |||| Sbjct 14002 GCCACAGCCTTTTTGTACA 13984 >seq1520 Length=48961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 371/571 (65%), Gaps = 22/571 (4%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 ||||| || ||| ||| | || || || | || || | |||||| ||||| || | Sbjct 6190 CATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAAC 6249 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || |||| || ||||| ||||| | |||||||||| |||| || ||||| || || ||| Sbjct 6250 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 6309 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGCACTGTCATG 36333 |||||||| | || | || |||| |||| || || |||| | | ||| | Sbjct 6310 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTG-ATCGTCTTC 6368 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| || | ||||| | || || | ||| | ||||| || || || |||| | | Sbjct 6369 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 6428 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATAC 36451 || | | | ||| ||||| | ||| || | ||||| ||||| || Sbjct 6429 GAACAAGAATGATCGTTCGAAGGGATCTTGGATATACGTTTGAATCAGCAAAGA--GTAA 6486 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATT---TGAAATCCGTAGAAACATCTAGCCTCG 36508 |||| ||||| |||||||| || |||| || ||||| ||||| ||| |||||| Sbjct 6487 GTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTCA 6543 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCT-AAATTTTCATTCACTATTCCGTCACT 36567 | | ||| | ||| || | || | | | | || ||||| || || || ||||| Sbjct 6544 GCGACCTGAATTTCACTAGAGAAGTG-ACGGATCAAGTTTTCGTTTACAATACCGTCGGA 6602 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG-GT--GTTAGTTT 36624 || || ||||| || | ||| | | ||| | ||||||| || | | || Sbjct 6603 CGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTT 6662 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 ||||| || | | ||| || || | || | |||||| ||||| || || ||||| Sbjct 6663 GTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGCCTC 6722 Query 36685 TGCCTTTTTATACATATTCCAGA--TGTCAT 36713 || ||||| ||| | ||||| |||||| Sbjct 6723 AGCTTTTTTGTACCTTCGCCAGATCTGTCAT 6753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 35882 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 35941 || || ||||| |||||||| ||||| ||||| | ||||| | ||||||||||| || Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 35942 GGATTGATAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 36000 || || | ||||| || | ||| || |||||| | || || || || ||| || | Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 36001 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 36060 || || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 66068 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGT 66126 |||| || | ||| |||||||| ||||| |||||| || | |||| |||| || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 66127 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 | || || | | | ||| | || || ||| | || || |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || ||||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATA 66304 ||||||||| | ||| |||| |||||| || || ||| || || || || | ||||| Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA-GTACCCGTTCGTTCCAGCAATATA 1680 Query 66305 G 66305 | Sbjct 1679 G 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147764752120