Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2556 181 2e-40 seq1520 111 2e-19 seq1379 87.8 3e-12 >seq2556 Length=115598 Score = 181 bits (200), Expect = 2e-40 Identities = 375/555 (68%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||||||| || | ||| || |||| || || || ||||| ||| | || || Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || | ||| || ||||| || || ||||||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG--GCG-CTGTCATG 50135 |||||| || || || || || || || | ||||||| || || || || ||||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 98664 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 98665 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 98724 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 98725 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 98784 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 98785 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 98844 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 |||||||| | |||| || || | |||||| ||||| || |||||| ||| || Sbjct 98845 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 98904 Query 50376 AAAAAACGCCAATACATGTTTTATAAAAT---GTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||| || || | ||||| | || |||| | | || ||| | | | | ||||| Sbjct 98905 AAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 98964 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 98965 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 99024 Query 50493 TTTATACATATTCCA 50507 || ||||| | ||| Sbjct 99025 CTTGTACATCTGCCA 99039 >seq1520 Length=48961 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 49684 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 49743 || || ||||| |||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 49744 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCCGCGAC 49802 || || | ||||| || | ||| || |||||| | || || || || |||||| | Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 49803 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 49862 || || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 87.8 bits (96), Expect = 3e-12 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 79947 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005 |||| || | ||| |||||||| ||||| ||||| || | |||| | || || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 80006 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 | || || | | | ||| | || || ||| | || || | |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || ||||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATA 80183 ||||||||| | ||| |||| |||||| || || ||| || || || || | ||||| Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA-GTACCCGTTCGTTCCAGCAATATA 1680 Query 80184 G 80184 | Sbjct 1679 G 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241478850520