Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2556 154 1e-32 seq1520 114 1e-20 >seq2556 Length=115598 Score = 154 bits (170), Expect = 1e-32 Identities = 297/432 (69%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| ||||| ||| | || ||||||| || || || ||||||||| | |||| Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||||| || || || |||||||| || || | ||| || ||||| ||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCG 14049 |||||||| || ||||| || || | |||| ||| |||| | ||||| ||||| | Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAG 98663 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 |||||||||| ||||| || | ||| || || | |||||||| || || | Sbjct 98664 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 98723 Query 14110 TAAATAAATATTC-CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || | |||| | | | || || | |||| | ||||||||| ||||| | || Sbjct 98724 CGAAGAGATATGCGCGTTGATTAAGATCCTTG--ACGTATGTATCGATAAGCAGAGAGTA 98781 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||| || | ||||||||| ||| || || ||||||||| | | || || | Sbjct 98782 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 98841 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| |||| | || || |||||| || || ||||| ||| || Sbjct 98842 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 98901 Query 14288 TGCAAAAAATGC 14299 ||||| ||||| Sbjct 98902 GGCAAAGAATGC 98913 >seq1520 Length=48961 Score = 114 bits (126), Expect = 1e-20 Identities = 362/545 (66%), Gaps = 21/545 (4%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || ||||| | || ||||||||||||||||| || || || |||| ||||| |||||| Sbjct 6211 CCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 6270 Query 13953 tttAACCAAAATATTGCA-GCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||||| |||| || || || ||||| || || ||||| || | || | || Sbjct 6271 TTGATCCAAAATA-TGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAA 6329 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCCATTTTCTAGCCCAT 14069 || | | |||||| |||||| ||| | | |||| |||||| || |||||| Sbjct 6330 TGCAACGAGTCGTTCCGCAAACGTAACTTGATCGTCTTCG--ATCCATCTTAGTGCCCAT 6387 Query 14070 TCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA--AATATTCCTTCT 14127 | | ||||| |||||| || || ||||| |||| | | || | ||| || ||| Sbjct 6388 GCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATGATCGTTC- 6446 Query 14128 CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 14187 | |||| || || || | ||| || || || |||| || || ||||||| Sbjct 6447 GAAGGGATCTTG-GATATACGTTTGAATCAGCAAAGAGTAAGTTTCTGAATGGATGTTTT 6505 Query 14188 CCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGTACTTC-CGAGT 14244 |||| | ||| || ||||| ||| ||| ||| || ||||| || | ||| | || Sbjct 6506 CCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCGACC--TGAATTTCACTAG- 6562 Query 14245 AAAATCTTTCGG-CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA-- 14301 | | | ||| ||| ||||| || || ||||| || || || |||||||| | Sbjct 6563 -AGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGACGCAGCGAAAAATGCTAGC 6621 Query 14302 ATATG-TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCC 14360 | | | | | |||| | | | | || || | || ||||| ||| ||||| Sbjct 6622 ACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTTGTTCCAGTCGTGCAAATCG 6681 Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 || ||||| |||| ||| || ||||| || ||| |||||||||| ||| || | Sbjct 6682 TTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGCCTCAGCTTTTTTGTACCTTCGC 6741 Query 14421 CATAT 14425 || || Sbjct 6742 CAGAT 6746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709752346200