Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2440 159 3e-34 seq2556 136 4e-27 seq1520 125 7e-24 >seq2440 Length=22844 Score = 159 bits (176), Expect = 3e-34 Identities = 378/568 (67%), Gaps = 5/568 (1%) Strand=Plus/Minus Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 ||| | |||||| || || || || | |||||||| | ||| || ||||| ||||| Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 ||| | | || ||||| | || | ||| || ||||| || ||||| || ||||| | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACG-ATGCTT 13828 || || || | ||||||||| || ||||| || | || ||||| |||||| ||| || Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCAAACGTATGATT 14361 Query 13829 TTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 13888 | | |||||||| ||||||| | ||| || |||| || || |||| Sbjct 14360 GGCCGAATCG-ATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGTTT 14302 Query 13889 CGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 |||| || ||||| || | | | || || | | ||| || || | ||||| | Sbjct 14301 CGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAGCA 14242 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 | |||||| || || || || ||||| || || ||||| || || ||||| | || Sbjct 14241 AAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACGAG 14182 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 |||| | || ||||| ||| ||||| | | | ||||||||||| |||||||| | Sbjct 14181 CTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACCGT 14122 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG-- 14126 | || ||||| || || | | || |||| | || ||||| ||||| Sbjct 14121 CCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAGAG 14062 Query 14127 -TTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 | | ||||| || || || || ||||| ||||| || |||||||||||| | Sbjct 14061 CTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGATG 14002 Query 14186 CGACAGCTTTTTTATACATTACCCATAT 14213 | ||||| ||||| |||| | |||| || Sbjct 14001 CCACAGCCTTTTTGTACAGTTCCCAAAT 13974 >seq2556 Length=115598 Score = 136 bits (150), Expect = 4e-27 Identities = 241/345 (70%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 |||||| ||||| ||| | || ||||||| || || || ||||||||| | |||| Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||||| || || || |||||||| || || | |||||| || || ||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTG 13837 |||||||| || ||||| || || | | || ||| |||| | ||||| ||||| | Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAG 98663 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 |||||||||| ||||| || | ||| || || | |||||||| ||||| | Sbjct 98664 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 98723 Query 13898 TGAATAAATGTTC-CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||| | || | | | | || || | |||| | ||||||||| ||||| | || Sbjct 98724 CGAAGAGATATGCGCGTTGATTAAGATCCTTG--ACGTATGTATCGATAAGCAGAGAGTA 98781 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 ||||||| || | |||||| || ||| || || |||||||| Sbjct 98782 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAA 98826 >seq1520 Length=48961 Score = 125 bits (138), Expect = 7e-24 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || ||||| | || ||||||||||||||||| || || || |||| ||||| |||||| Sbjct 6211 CCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 6270 Query 13741 tttAACCAAAATATTGCA-GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | |||||||| |||| ||||| |||||||| || || ||||| || | || | || Sbjct 6271 TTGATCCAAAATA-TGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAA 6329 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || | |||||||| |||||| ||| | || | |||||| || |||||| | Sbjct 6330 TGCAACGAGTCGTTCCGCAAACGTAACTTGATCGTCTTCGATCCATCTTAGTGCCCATGC 6389 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA--AATGTTCCTTC 13914 | ||||| |||||| || || |||||||| | | |||| | |||| || ||| Sbjct 6390 CGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATGATCGTTC 6446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478570595678520