Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq886 179 5e-40 seq2556 172 7e-38 seq1520 111 2e-19 seq1379 84.2 3e-11 >seq886 Length=61200 Score = 179 bits (198), Expect = 5e-40 Identities = 386/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||| ||||||||| | ||| || | ||||| || |||| | Sbjct 12506 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 12447 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| |||||||| || | |||||| || ||||| || || ||||| ||||| Sbjct 12446 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 12387 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCACTG-TCATGT 42241 || ||||| || || |||||||| | || | ||| || | ||||| | || ||| Sbjct 12386 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCACTG 12327 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 12326 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCA 12267 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || | | ||| | ||||| | ||||| ||||| | |||| || | Sbjct 12266 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 12207 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| || | ||||| | ||| Sbjct 12206 TCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 12147 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | | || ||||| | ||| ||||| || || || ||| ||| ||| Sbjct 12146 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGCA 12087 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-------TTATT 42534 || ||||| | ||| | || || | |||| || ||| | | || || Sbjct 12086 AAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGGTTGTT 12031 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| |||| | ||||| |||| ||| | ||||| | ||||| || || || || || Sbjct 12030 CCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGC 11971 Query 42595 CTTTTTATACATATTCCAGATATCATGATAT 42625 ||| || ||||| | || ||||| |||||| Sbjct 11970 CTTCTTGTACATTTGCC--ATATC-TGATAT 11943 >seq2556 Length=115598 Score = 172 bits (190), Expect = 7e-38 Identities = 372/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||||||| || | ||| ||||||| || || | ||||| ||| | || || Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || | ||| || || || || || || |||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG 42240 |||||| || || || || || || | | ||||||| || || | | ||||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 98664 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 98665 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 98724 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||||| || |||| ||| || || ||||||||||| | ||| || | Sbjct 98725 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 98784 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| ||||||| |||||| || || || || || || || | | ||||| | | Sbjct 98785 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 98844 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||| | |||| || || | |||||||||||| || |||||| ||| || Sbjct 98845 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 98904 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCA 42537 ||| || || | ||||| | || |||| ||||| ||||| | ||||| Sbjct 98905 AAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 98964 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | ||| | || | || | ||||| ||||| || ||||||||||| || Sbjct 98965 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 99024 Query 42598 TTTATACATATTCCA 42612 || ||||| | ||| Sbjct 99025 CTTGTACATCTGCCA 99039 >seq1520 Length=48961 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 41789 ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 41848 || || ||||| |||||||| || |||||||||| ||||| | |||||||||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 41849 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAT 41907 || || | ||||| || | ||| || |||||| | || || || || ||| || || Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 41908 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 41967 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 72030 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| || | ||| |||||||| ||||| ||||| || | |||| | || || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 72089 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 | || || | | | ||| | || || ||| | || || | |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || ||||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||||||| | ||| |||| |||||| || || Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113671542680