Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=474241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 43912 CACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGT 43970 |||||| ||| || || |||||| ||||| ||||| || | ||| |||| | Sbjct 254580 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 254521 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||| || ||||| ||||| ||||| || || ||||| |||| | |||||||| || Sbjct 254520 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 254461 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| ||| ||||| | | | ||| || | | ||| || || | || || || | Sbjct 254460 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 254401 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || ||||||||||| || ||||| Sbjct 254400 TTCCGGTCAATGTCTTCACAAAGATCTGCAT 254370 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAAT-CGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||| |||||||||| || | || || |||| || | || ||||| ||||| Sbjct 254332 TCTTTTTGGATATTATAATCCGAAAGAGTG-CGGCCATCTTCTAGCTGCTTTCCAGCAAA 254274 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | ||||| ||||| |||| | ||| || ||||| ||| ||| || || | Sbjct 254273 GATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATT 254214 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | || |||||| || | || || || || ||||| |||||||| || Sbjct 254213 GTCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 254154 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 254153 AAAGATCTGCAT 254142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354764442518364