Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq962 118 2e-22 seq2321 107 3e-19 seq2600 102 1e-17 seq723 102 1e-17 seq2811 96.9 5e-16 >seq962 Length=59862 Score = 118 bits (130), Expect = 2e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| || || || |||||||| || ||||||||||| || || ||| | || Sbjct 3416 AGGTATCACCAAACCTGCGATTCGTCGTCTCGCCCGTCGTGGTGGTGTTAAACGTATTTC 3357 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || || |||||||||||| || | ||| || |||||||||||| ||| ||||||| Sbjct 3356 CGGTCTGATCTATGAAGAGACGCGAGGTGTATTAAAGATCTTCCTCGAGAATGTTATCCG 3297 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAA 16620 ||| || | ||| ||||||||||| || Sbjct 3296 TGACTCTGTTACCTACACCGAGCACGCGAA 3267 >seq2321 Length=33795 Score = 107 bits (118), Expect = 3e-19 Identities = 121/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||| ||||| || || || |||||||| || |||||||||||||||||||| | || Sbjct 18994 AGGAATTACCAAACCTGCCATTCGTCGTCTCGCCCGTCGTGGTGGAGTCAAGCGCATTTC 19053 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | | || ||||| | ||| | ||| ||||||| ||||| | | ||||| | Sbjct 19054 TGGTCTCATTTACGAAGAAACTCGCGGTGTACTGAAGATTTTCCTGGAAAATGTTATTCG 19113 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAGACT 16630 |||| | | || |||||||||||||||| ||||| || Sbjct 19114 TGATTCCGTAACGTACACCGAGCACGCTAAACGGTAAGTCT 19154 >seq2600 Length=273774 Score = 102 bits (112), Expect = 1e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || || || ||| |||| Sbjct 152855 AGGTATAACAAAGCCCGCTATTCGTCGTCTTGCGCGTCGTGGAGGTGTTAAACGTATCTC 152914 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| | |||||||||||| ||||| |||| | |||||||||||| Sbjct 152915 TGGTCTCATCTATGAAGAGACTCGTGGTGTTCTTAAGATCTTCCTC 152960 Score = 96.9 bits (106), Expect = 5e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || ||||||||| | || Sbjct 180031 AGGCATAACAAAGCCTGCTATTCGTCGTCTCGCACGTCGTGGAGGTGTCAAGCGTATTTC 179972 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| || |||||||||||| ||||| ||| | || || |||||| Sbjct 179971 TGGTCTGATCTATGAAGAGACTCGTGGTGTCCTCAAAATTTTCCTC 179926 >seq723 Length=64965 Score = 102 bits (112), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || |||||||||||||| || ||||||||||| || |||||| |||| Sbjct 6299 AGGTATCACAAAACCCGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 6358 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| ||||| | |||| || | ||||||||| | ||| ||| || | Sbjct 6359 CGGTCTCATCTACGAAGAAACCCGTGGGGTGCTCAAGATCTTCTTGGAGAACGTCATTCG 6418 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAG 16627 ||| || || || || || |||||||||| ||||| Sbjct 6419 CGATTCTGTCACGTACACTGAACACGCTAAACGGTAAG 6456 >seq2811 Length=96991 Score = 96.9 bits (106), Expect = 5e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || ||||| || ||||| || ||||| ||||||||||| || || |||||| | || Sbjct 34707 AGGCATTACCAAACCCGCTATTCGCCGTCTTGCTCGTCGTGGAGGTGTAAAGCGTATTTC 34766 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||| | |||| ||| || ||||||||||| ||| || || | Sbjct 34767 TGGTCTCATCTACGAAGAAACCCGTGGTGTATTAAAGATCTTCCTTGAGAATGTCATTCG 34826 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| || | ||||| || || |||||||| Sbjct 34827 TGACTCTGTAACGTATACTGAACATGCTAAACG 34859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072417763799