Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq886 190 3e-43 seq2556 187 3e-42 seq2440 163 4e-35 seq1520 114 2e-20 seq1379 93.3 5e-14 >seq886 Length=61200 Score = 190 bits (210), Expect = 3e-43 Identities = 384/564 (68%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||| |||||| || | ||| || || ||||| || |||| | Sbjct 12506 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 12447 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| |||||||| || | |||||| ||||| ||||| || ||||| ||||| Sbjct 12446 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 12387 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33480 || ||||| || ||||||||||| | || | ||| || | ||||| | ||| ||| Sbjct 12386 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCACTG 12327 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 12326 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCA 12267 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 12266 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 12207 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 12206 TCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 12147 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 12146 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGCA 12087 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 12086 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 12028 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| | ||||| |||| ||| | |||||| | ||||| || || ||||| ||||| Sbjct 12027 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 11968 Query 33837 TTTATACATGTTCCAGATGTCATA 33860 || ||||| | ||| || | ||| Sbjct 11967 CTTGTACATTTGCCATATCTGATA 11944 >seq2556 Length=115598 Score = 187 bits (206), Expect = 3e-42 Identities = 377/555 (68%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||||||| || | ||| || |||| || || || ||||| ||| | || || Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33479 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 98664 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 98665 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 98724 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 98725 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 98784 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 98785 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 98844 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| | |||| || ||| || |||||| ||||| || |||||| ||| || Sbjct 98845 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 98904 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 33776 ||| || || | ||||| | || |||| ||||| | || | | | | ||||| Sbjct 98905 AAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 98964 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 98965 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 99024 Query 33837 TTTATACATGTTCCA 33851 || ||||| | ||| Sbjct 99025 CTTGTACATCTGCCA 99039 >seq2440 Length=22844 Score = 163 bits (180), Expect = 4e-35 Identities = 381/566 (67%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||||| ||||| ||||| ||| ||||| ||||| || | ||| || ||||| || || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 ||||| || || ||||| || || | || || | ||| || || | || ||||| | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 ||| || |||| ||| || || || ||||| || | || | || || ||| | | Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCA-AACGTATGAT 14362 Query 33474 --GTC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 | | || ||||| || |||||| || || || | | |||| || |||| Sbjct 14361 TGGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGTTT 14302 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--A 33587 | ||||| ||| | | ||||| || | | | || ||| || | ||| | | Sbjct 14301 CGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAGCA 14242 Query 33588 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33647 |||| |||||| ||||||||||| ||||| || || ||||| ||||||||||| | Sbjct 14241 AAGA--ATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACG 14184 Query 33648 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 ||| || | || | || || | |||||| | | | || |||||||| || || || Sbjct 14183 AGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACC 14124 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTT 33765 ||| || ||||| ||||| | ||| | | || | ||| || | || Sbjct 14123 GTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAG 14064 Query 33766 AGTT-TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 || | ||||||| || ||| | ||||| || | ||| |||||||||||||||||||| || Sbjct 14063 AGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGA 14004 Query 33825 TGCCTCTGCCTTTTTATACATGTTCC 33850 |||| | |||||||| |||| ||||| Sbjct 14003 TGCCACAGCCTTTTTGTACA-GTTCC 13979 >seq1520 Length=48961 Score = 114 bits (126), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33028 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33087 || || ||||| |||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 33088 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCCGCGAC 33146 || || | ||||| || | ||| || |||||| | || || || || |||||| | Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 33147 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 33206 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 >seq1379 Length=51093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 63224 CATA-AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282 |||| || | ||| |||||||| ||||| ||||| || | |||| |||| || | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 63283 TTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 | || || | | | ||| | || || ||| | || || | |||||||||||| | | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || ||||| | | |||| || ||||| || ||||| ||||| | |||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||||||| | ||| |||| ||||||||| || Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGA 1704 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 62583 TCGTATGGTCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62639 |||||||| || || ||||| || | ||| ||||||||||| | ||||| | |||| Sbjct 2674 TCGTATGGACCGCATT--TTCTC-GCGATTTCGCAACTCGCCTCACAGGCACCATGATAA 2618 Query 62640 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 62699 || |||||||| |||| | ||||| | || |||||| | ||| ||||| ||| Sbjct 2617 ATCGTTTCGAATATCTGGATGTTTAGCTGTTTTGCTTCAACCGAATCGAATGGCATCTTT 2558 Query 62700 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 || | ||||| | || || | ||||| ||||||||||| || || Sbjct 2557 AACACCATAAAGACATCGGCAAGACCTTGCACACCAATACCAATGGG 2511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923504645880