Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2440 125 2e-23 seq777 107 5e-18 seq886 102 2e-16 seq2556 89.7 1e-12 >seq2440 Length=22844 Score = 125 bits (138), Expect = 2e-23 Identities = 293/437 (67%), Gaps = 19/437 (4%) Strand=Plus/Plus Query 22219 GCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTG-ACTAATTTTGCATC 22277 || ||||||||| | || |||||||| || ||| || |||| | |||||||| || Sbjct 14103 GCGTTCTTTGCTGCGGCGGACGGTATTGTCAATGAAAACTTAGTACAGCAATTTTGC-TC 14161 Query 22278 TGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGT 22337 || || || || || || | |||||||| || | ||||| ||||| |||||| | Sbjct 14162 CGAGGTTAAACTTCCTGAAGCTCGTTGTTTCTACGGCTTTCAAATCATGATGGAAAATAT 14221 Query 22338 TCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGAC-GAACAAC 22396 ||| |||| | |||||| || | | || | || | || || ||||||| Sbjct 14222 TCATTCGGAGATGTATTCTTTGCTTATCCAAACC----TATATTCCCAACACCGAACAAC 14277 Query 22397 GAAAC---TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGG 22453 |||| ||||| ||| || ||||| | || ||| ||||| ||| |||| Sbjct 14278 AAAACCACTTATTTTCCGCCATCGAAACCATCCCTTCTATTGCCAATAAAGCAACATGGG 14337 Query 22454 CGCTGAAATGGATGAA------CAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTG 22507 | |||||||||| | |||| | | | || |||||||| || | ||||||| Sbjct 14338 CTTTGAAATGGATCGATTCGGCCAATCA---TACGTTTGCGGAACGGCTCGTCGCATTTG 14394 Query 22508 CTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaC 22567 | | ||||| || | || || ||| | ||||| |||||||| ||| | || ||| Sbjct 14395 CAGCTGTTGAGGGACTCTTTTTCTCTAGTTCATTTGCCGCAATCTTCTGGTTGAAGAAAA 14454 Query 22568 GTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTC 22627 | | ||||||| ||||| ||||||||||||| | || || || |||||||| | | Sbjct 14455 GGGGGCTTATGCCTGGTCTTTCGTTTTCAAATGAACTCATCAGTCGTGATGAGGGAATGC 14514 Query 22628 ATACCGATTTTGCGTGT 22644 | ||||| || || ||| Sbjct 14515 ACACCGACTTCGCCTGT 14531 >seq777 Length=200876 Score = 107 bits (118), Expect = 5e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||||| |||||| || ||||||||||| | || || |||||||| | || | Sbjct 115048 TTACATTGCCGGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGT---A 115104 Query 363795 CAA---TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 ||| |||||| | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 115105 CAATGCTACTGCACGATATGTCGACCAAGGTGGTAACAAGCGTCCTGGGGCTTTCGCTAT 115164 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 |||||||| ||| ||||| ||||| || | | | | || | |||| || || Sbjct 115165 CTATCTCGAACCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGG 115224 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| |||| || |||||| | |||||||| || ||| || Sbjct 115225 CAAAGAGGAAGTGCGCGCCCGTGATTTATTCTATGCTCTATGGATT 115270 >seq886 Length=61200 Score = 102 bits (112), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 ||||||| | || ||| ||||| || ||||| ||| ||||| | |||| | Sbjct 12280 ACCATTCCTTGCATCAAGCGCAAGGCCGAGTGGGCTCTGCGCTGGATCAGTGATGAGCAC 12339 Query 22480 TCA---TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 || |||| || ||||| | || ||||||| ||||||||||||||||| ||||| Sbjct 12340 TCGGTTTTCGGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGC 12399 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 | || | ||||||||| | || || |||| | | ||||| || | |||| ||| Sbjct 12400 TCCTTCGCGTCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCA 12459 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||| | || || || ||||||||| | |||||||| || || || Sbjct 12460 AACGAGCTCATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTG 12506 >seq2556 Length=115598 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 ||||| |||| || || || || || |||||||| | || | | || || ||| || Sbjct 98628 GCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTA 98569 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || || | | ||||| || ||||| | |||||| ||| | || ||||||||||| Sbjct 98568 AAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAA 98509 Query 22621 GGTCTTCATACCGATTTTGCGTGT 22644 ||| | ||||||||||| |||||| Sbjct 98508 GGTTTACATACCGATTTCGCGTGT 98485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303302784279626