Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq923 131 1e-25 seq2517 122 6e-23 seq1 93.3 3e-14 >seq923 Length=1536 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 159 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 100 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 99 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 65 >seq2517 Length=18303 Score = 122 bits (134), Expect = 6e-23 Identities = 257/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| | || || || || || || ||||||||||||||| |||||| | || || | Sbjct 14483 CCAAAATTGAAGGCAAAGGGAATGGCATTAAAACCGTCATTCCTAACATGGCCGACGTAG 14424 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || ||| | | || ||| | ||||||| || |||| ||||| ||||||||||| | Sbjct 14423 CTCGTGCGTTGAGCCGTCCTCCTGCCTACCCAACCAAATTCTTCGGCTGCGAACTTGGGG 14364 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | ||||| ||||||| | || || || |||| |||||| ||||| | ||| | || Sbjct 14363 CGCAGACCTCGTTTGATGAAAAGAATGAACGCTACATCGTAAACGGCGCTCATGATGCTA 14304 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | |||| ||| | ||||||||||| ||| ||| || || | || | ||| Sbjct 14303 ACCGCCTGCGGGAACTCCTTGACGGCTTCATTGACAAATTCGTCTTATGCAAGTCTTGCA 14244 Query 6472 ATAACCCGGAGACCGAGCTTATTGT-GTCTACCAAG-----AGAAACACCATCTCTCAGG 6525 | |||||||| || ||||| || | | | |||| || | |||| | | Sbjct 14243 AGAACCCGGAAACGGAGCTCATCATCCTAAAACAAGGTCGTAGCGAGGACATCATCCGTG 14184 Query 6526 GCTGCAAAGCGTGCGGTTACCATGGCA--AGC-TGGATTTATCACACAAACTCAACACCT 6582 ||||||||| |||||| | | ||| || | ||| | || ||||||| || | Sbjct 14183 ACTGCAAAGCCTGCGGTGAAC---GCACCGGCGTCGATATGCGTCATAAACTCACTACAT 14127 Query 6583 TCATACTGAAGAATCCTCC 6601 ||||| ||||||||||||| Sbjct 14126 TCATATTGAAGAATCCTCC 14108 >seq1 Length=474241 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| |||||| || ||| || ||||| || || ||||| | ||| | || | Sbjct 254580 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 254521 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | || || ||||| ||||| || | || ||||| |||| || | ||||||||||||| Sbjct 254520 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 254461 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| ||| ||| ||||| | || ||| || | || || || | || || || | Sbjct 254460 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 254401 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||| || |||||||| Sbjct 254400 TTCCGGTCAATGTCTTCACAAAGATCTGCAT 254370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934777959733