Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq2933 129 5e-25 seq1017 95.1 1e-14 seq2786 93.3 4e-14 >seq1 Length=474241 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| || ||||||| | || ||||||||||| Sbjct 254141 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 254200 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || |||| ||||| | ||| || || || || || || ||||||| Sbjct 254201 TGATACCATTGACAATGTGAAGGCAAAGATTCA-GGATAAGGAGGGTATCCCTCCTGACC 254259 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| ||||| || || || ||||||||| |||||| | ||||| | Sbjct 254260 AACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATA 254319 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||||||| || || ||| | || || Sbjct 254320 ATATCCAAAAAGAATCGACTCTTCATCTTGTTCT 254353 Score = 122 bits (134), Expect = 8e-23 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || || ||||| ||| Sbjct 254370 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 254429 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | ||||| | ||| ||||||||||| ||||| || ||| Sbjct 254430 GACACTATCGA--CAATGTCAAGGCAAAGATTCA-GGACAAAGAAGGCATTCCTCCCGAC 254486 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || || || |||| ||| || | || || Sbjct 254487 CAACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTAT 254546 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| || || || ||| Sbjct 254547 AACATTCAGAAAGAGTCTACCCTTCAT 254573 >seq2933 Length=244213 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || || ||||||||| Sbjct 207604 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTCGAGTCGTCT 207663 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| ||||| ||||| ||||| ||||||| Sbjct 207664 GACACTATTGA--CAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACC 207721 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| ||||| || || || |||| |||||| | ||||||| Sbjct 207722 AACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACA 207781 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||||| || || || || | || || | || ||||||| Sbjct 207782 ATATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 207830 >seq1017 Length=59083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| ||||| |||||||| | ||||| || || |||||| | || |||| || ||| Sbjct 44624 ATTCCCCCTGATCAACAGCGACTCATTTTCGCTGGAAAACAACTTGAGGATGGACGTACT 44565 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 44564 CTGAGTGATTACAACATTCAGAAAGAATCCACCCTTCACTTAGTGCT 44518 >seq2786 Length=9315 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || | || || |||| ||| Sbjct 1735 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGGCGATTACTCTGGAGGTTGAGTTGTCG 1676 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| ||||| || || || || ||||||| Sbjct 1675 GACACCATTGA--CAATGTAAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCTGACC 1618 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||| ||||| || || || |||| |||||| | |||||||| Sbjct 1617 AGCAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCAC---GCCCGATTACA 1561 Query 25177 ATATTCAAAAAGA 25189 ||||||| || || Sbjct 1560 ATATTCAGAAGGA 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311929354045