Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2556 212 7e-50 seq886 165 9e-36 seq2440 163 3e-35 seq1520 138 1e-27 >seq2556 Length=115598 Score = 212 bits (234), Expect = 7e-50 Identities = 390/561 (70%), Gaps = 13/561 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT--GTTA 93149 ||||| || ||||||||||||||||| ||||| || | ||| || ||||| |||| Sbjct 98486 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTT--TGAATAAGTTA 98543 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||| || || ||||| | ||| || || ||||| || |||||||||| Sbjct 98544 GGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAA 98603 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || || || || || || |||||||| | | || |||||| | || || | | Sbjct 98604 AGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGT-C 98661 Query 93270 TGAT--CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||| |||||| | ||||| |||||||| ||| || || |||| |||||| || || Sbjct 98662 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 98721 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || || | || | | ||| | |||||||||||| | |||||| || Sbjct 98722 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 98781 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG- 93446 |||||||||| || || ||||| |||||||| || || || | | || || | Sbjct 98782 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 98841 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || | |||||||| | ||||| | ||| | |||||||| || || ||||| || || | Sbjct 98842 TGCT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 98900 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAA--GCTTAT 93563 | ||||| || || | | ||| | || ||||| ||| ||| | ||||| ||| | Sbjct 98901 CGGCAAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGT 98960 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| ||||| | | || || | ||||| ||||| ||||||||||||| Sbjct 98961 TCCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTG 99020 Query 93624 CTTTTTTGTACATATCCCATA 93644 |||| |||||||| | ||||| Sbjct 99021 CTTTCTTGTACATCTGCCATA 99041 >seq886 Length=61200 Score = 165 bits (182), Expect = 9e-36 Identities = 375/560 (67%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || ||||||||||| | ||| || || || || | ||| || ||| | || Sbjct 12507 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 12448 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | | ||| || ||||| | |||||| || || || || ||||| || || Sbjct 12447 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 12388 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || || | ||| ||| | ||| | | | | || Sbjct 12387 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCACT 12328 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | |||||| ||||| || ||| || ||||| | || |||||||| | Sbjct 12327 GATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATC 12268 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| |||| || ||| | | ||| |||||||| ||||| | ||||| || | Sbjct 12267 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 12208 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||||| || | |||||||| ||| ||||| |||||||| || | || || | || Sbjct 12207 CTCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 12148 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| ||||| | || || | || | ||||| || || || || ||||| || || || Sbjct 12147 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGC 12088 Query 93511 aaaaaaaGCCAATATATGCTTTAT--AAAATGTTTCTC-ATCATCTTTAAGC--TTATCC 93565 ||| || || | | | | || | ||| ||| | ||| || | || || | | Sbjct 12087 AAAGAACGCGAGGACACGGGAGATGAAGAATCGTTCGCTGTCA--TTCAGGCGGTTGTTC 12030 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || || || |||||||| | ||| | ||||| ||||||| || || || || || Sbjct 12029 CAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCC 11970 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | |||||| Sbjct 11969 TTCTTGTACATTTGCCATAT 11950 >seq2440 Length=22844 Score = 163 bits (180), Expect = 3e-35 Identities = 382/572 (67%), Gaps = 17/572 (3%) Strand=Plus/Minus Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| ||| || || |||||||| || | || || || || || | ||||| | Sbjct 14538 ACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGAAA 14479 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | | | ||| || | || || | |||||| | ||| || |||| ||||| || || Sbjct 14478 ACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACTAG 14419 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA------ATTTG 93257 | ||||| | || || || ||||||||||| || | ||||| ||||| ||| | Sbjct 14418 AGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCAAACGTATGATTGG 14359 Query 93258 CGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | |||| ||||||||| |||||||| ||||| || |||| |||| | | Sbjct 14358 CCGAATC------GATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGG 14305 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 ||||||| ||| ||||| || | | | | || | | | || || || | ||| | Sbjct 14304 TTTCGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAA 14245 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 || ||||||||| || ||||| | ||| ||||| ||||| || ||||||||||| | Sbjct 14244 GCAAAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAAC 14185 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAG-AAAATCTCTCTACGAGATTTTCATTGACTATA 93496 |||||| | | | || || ||| ||||| || ||| | ||||||||||| ||| Sbjct 14184 GAGCTTCAGGAAGTTTAACCTC-GGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATA 14126 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT- 93555 || || | || ||||| || || | | | | | || || ||||||| || Sbjct 14125 CCGTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTG 14066 Query 93556 -AAGCT-TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 |||| ||| ||| || ||||| || ||||| |||||||| || |||||||| Sbjct 14065 AGAGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAA 14006 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||||| | || |||||||||| ||||| || Sbjct 14005 GATGCCACAGCCTTTTTGTACAGTTCCCAAAT 13974 >seq1520 Length=48961 Score = 138 bits (152), Expect = 1e-27 Identities = 371/556 (67%), Gaps = 21/556 (4%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTT 93148 ||| ||||||||||| || | ||||| || || ||||| | || || || || Sbjct 6189 GCATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATA--AGTTCGTTTGAAAAGGTC 6246 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 || || || || | ||| ||||| |||| ||||||||| | || ||| || || ||| Sbjct 6247 AACCCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAA 6306 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC-GGAATTACT 93267 || || ||||| | ||||| ||||| || | ||||| ||||| | | || || Sbjct 6307 AAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTGATCGTCT 6366 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||||| ||| ||||| | ||||||| ||||| ||||| | |||||||||| Sbjct 6367 TC-GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGA 6425 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || | | | ||| ||| | |||| | || || || | || | || ||| || Sbjct 6426 ACTGAACAAGAATGATCGTTCGAAGGGATCTTGGATATACGTTTGAATCAGCAAAGAGTA 6485 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAAT--TTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||| ||||||| || ||||| || | |||||||| ||||| ||| ||| || Sbjct 6486 AGTTTCTGAATGGATGTTTTCCAT--CATTGACTGGAATCCATAGAAGGATCGAGCCTCA 6543 Query 93446 GTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | || ||| | ||| ||| || | | | || ||||| || || ||||| ||||| Sbjct 6544 GCGACCTGAATTTCACTAGAGAAGTGACGGATCAAG-TTTTCGTTTACAATACCGTCGGA 6602 Query 93505 TGCTGCaaaaaaaGCCAATATATG---CTTTATAAAATGTTTCTCATCATCTTTAA---G 93558 || || ||||| || | | | | | | | ||| | ||| | | || | | Sbjct 6603 CGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCG---CTCGTTTGCGTTCATGCG 6659 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || | ||| ||| | ||| |||||||| || | ||||||| |||||| || || || Sbjct 6660 GTTGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGC 6719 Query 93619 TTCTGCTTTTTTGTAC 93634 || |||||||||||| Sbjct 6720 CTCAGCTTTTTTGTAC 6735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839618407320