Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq2933 127 2e-24 seq2786 86.0 5e-12 >seq1 Length=474241 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||| | || ||||| | | Sbjct 254142 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTCT 254201 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || ||| ||||| || ||||||||||| || || || ||| Sbjct 254202 GATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAA 254261 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || ||| |||| ||| |||||| | || ||||| || Sbjct 254262 CAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAAT 254321 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| || | ||| | ||| Sbjct 254322 ATCCAAAAAGAATCGACTCTTCATCTTGTT 254351 >seq2933 Length=244213 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||||||||| || || | | Sbjct 207604 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTCGAGTCGTCT 207663 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||||| || |||||||| |||||||| || || ||| Sbjct 207664 GACACTATTGACAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 207723 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||||| |||||| ||||| | || |||||||| Sbjct 207724 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 207783 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| ||||| || ||| Sbjct 207784 ATTCAGAAAGAGTCAACC 207801 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || | || || |||||| ||||| | || || || | | Sbjct 207376 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 207435 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || |||||||| ||||| ||||||||| Sbjct 207436 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 207495 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||| ||| | || ||| |||||| | || || |||||| Sbjct 207496 CAACGACTAATCTTCGCTGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 207555 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || | ||| | || | || ||||| Sbjct 207556 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 207602 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| | ||||| || || || | | Sbjct 207832 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATTACTCTGGAGGTTGAGTCGTCG 207891 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| ||||| || || || Sbjct 207892 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 207951 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| |||||| ||||| | |||||||||||| Sbjct 207952 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 208011 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 208012 ATCCAGAAGGAGTCGAC 208028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || ||||| || |||||||||||||||||||| || || ||| | || ||| || ||| Sbjct 207253 ATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAACC 207312 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | ||||| ||||||||||| || |||||||| Sbjct 207313 CTTTCCGACTACAACATTCAGAAGGAATCCAC 207344 >seq2786 Length=9315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | ||||| || || || | Sbjct 1735 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGGCGATTACTCTGGAGGTTGAGTTGTCG 1676 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || ||||| || |||||||||||||| || || || || Sbjct 1675 GACACCATTGACAATGTAAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 1616 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| |||||| ||||| |||||||||| Sbjct 1615 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCAC---GCCCGATTACAAT 1559 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 1558 ATTCAGAAGGA 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712433731295