Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq2933 100 3e-16 >seq1 Length=474241 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| |||||||||||||| || || ||||| | | ||||| | ||| Sbjct 254353 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 254294 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || || || || ||||| ||||| || || || || || Sbjct 254293 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 254234 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | |||||| | ||||| || | || | |||| Sbjct 254233 TGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTC 254174 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || || || || |||||| Sbjct 254173 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 254141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || ||||| |||||||| || || | | || || | || || | | Sbjct 254575 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 254516 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || | ||||| |||||||||||||| |||||||| || || || Sbjct 254515 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 254456 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 ||| ||| ||| || | || ||| | || || || | ||| | ||||| ||| Sbjct 254455 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCG 254396 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || || ||||| Sbjct 254395 GTCAATGTCTTCACAAAGATCTGCAT 254370 >seq2933 Length=244213 Score = 100 bits (110), Expect = 3e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| ||||| || || || ||||||||||| | | ||||| | || || | | Sbjct 208037 AGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAAC 207978 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| ||||||| ||||||||||| || ||||| || || || || || || Sbjct 207977 TGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATC 207918 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGC 64415 || ||||||| || | || | ||| || || || || | ||| | ||||||| Sbjct 207917 TTCGCCTTTACATTGTCAATGGTGT--CCGACGACTCAACCTCCAGAGTAATCGTCTTGC 207860 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || || ||||| || ||||| Sbjct 207859 CTGTGAGGGTCTTGACGAAGATCTGCAT 207832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || ||||||||||| || | | |||||| | || Sbjct 207588 AAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATC 207529 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| || | || || || || || ||||||||||| || || || || Sbjct 207528 TTCGAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATC 207469 Query 64351 TTGTATTTT 64359 ||||| || Sbjct 207468 CTGTATCTT 207460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625794760920