Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2933 143 6e-29 seq1 118 2e-21 >seq2933 Length=244213 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| || | ||||||||||| | || | ||||||| Sbjct 207587 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 207528 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || || || || || ||| ||| || || ||| Sbjct 207527 TCGAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 207468 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||||||| | || || ||||| |||||||| Sbjct 207467 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 207408 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 207407 TTGCCCGTGAGGGTCTTAACAAAGATTTG 207379 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| |||||||||||||| |||| |||||| || | | || | ||||| |||| Sbjct 208039 CAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCA 207980 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||| || || || ||||||||||||||||| || ||| || || ||||| | Sbjct 207979 ACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGA 207920 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || || | |||||| | | || || |||| || |||||||| | Sbjct 207919 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTGC 207860 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || || Sbjct 207859 CTGTGAGGGTCTTGACGAAGATCTG 207835 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | |||||||||||||| || ||||| || || | ||||| |||| | || Sbjct 207825 TCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGT 207766 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||| |||||| || || || |||||||| || ||||| || ||| || Sbjct 207765 GCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACC 207706 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || ||| || || | ||||| | | || || || | Sbjct 207705 TTCCTTGTCCTGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGACCTCAAG 207646 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || || || || Sbjct 207645 AGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTG 207607 >seq1 Length=474241 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || |||||||| || ||||||| || || || | | ||| Sbjct 254362 CGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTG 254303 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| || ||||| ||||| || ||||| ||| || || Sbjct 254302 CGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCC 254243 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| |||||| || | ||| || | | || || ||||| Sbjct 254242 TCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAG 254183 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 254182 GTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 254145 Score = 114 bits (126), Expect = 3e-20 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| |||| |||| || || || ||||| || || | ||| ||||||| | || | Sbjct 254587 GAAGACTCAC--CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTAC 254530 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||| |||| ||||||||| || ||||| | |||||| ||||| ||| ||| |||| Sbjct 254529 GACCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTT 254470 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 || |||||||||||| ||| || |||| ||||| | | || || || | | Sbjct 254469 CTTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAG 254410 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||| || || | || |||||||| || || Sbjct 254409 TGATCGTCTTTCCGGTCAATGTCTTCACAAAGATCTG 254373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178875635688881