Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1103 176 3e-38 seq1215 91.5 1e-12 seq2265 86.0 5e-11 >seq1103 Length=350735 Score = 176 bits (194), Expect = 3e-38 Identities = 460/693 (66%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||||||||||| ||||| | ||||| |||||||| | || || ||||| || ||| Sbjct 86675 TTATCAGCGGCAGAAACATTCAAGATACCGTTGGCATCGATGTCGAAGGTGACCTCGATT 86734 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | ||||||||||||| || | | ||| | || || || Sbjct 86735 TGAGGTACACCACGGGGAGCAGGTGGGATACCAGAAAGCTCGAATTTCCCAAGGAGGTTG 86794 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || |||||| |||||||||||||| | |||||| || ||| ||| ||| Sbjct 86795 TTGTCCTTAGTGCGAGCACGTTCACCCTCGAAGACTTGGATGAGCACACCAGGTTGGTTA 86854 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || | ||||||| || | || || ||| || | || ||||| | | || Sbjct 86855 TCGGCGTAAGTTGAGAAGGTTTCAGACTTCTTAGTCGGGACAGTGGTGTTACGCTTGATG 86914 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | ||||| | |||||| || ||||| | ||| ||||| || |||| ||| || | Sbjct 86915 AGTGCAGTCATCACACCACCAGCAGTTTCAATACCGAGAGAGAGGGGAGAGACGTCGAGG 86974 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || | | || ||| || ||| ||| | ||| | ||| || ||||| | |||| Sbjct 86975 AGAAGTAGATCCTGAGTCTTCTCAGAAGTGTCACCGGATAAAATCGCAGCTTGGACAGCA 87034 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || |||||||| |||||||| |||| | | || | | || |||||||| Sbjct 87035 GCACCGTAGGCAACAGCCTCATCAGGGTTAATGCTCTTGTTGGGCTCCTTGCCATTGAAG 87094 Query 517670 AAATTTGAAAGAAG-TTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 || | || | || ||| | ||| ||||||||||| ||| || || || | |||| Sbjct 87095 AAGTCGGAGACGAGCTTGACGATACG--AGGAATACGAGTTGAACCACCGACAAGGACAA 87152 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 |||| ||||| | | ||||| | || ||||| | || || || || || || | Sbjct 87153 TTTCGTGCACATTGGCCTTATCAATCTTGGAATCGCGAAGGACCTTCTCGACAGGATCGA 87212 Query 517788 GACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTG 517843 || ||| | || | |||| || ||||| ||||| || | ||||| |||| Sbjct 87213 GA-GTGCTACGGAAAAGGTCTTGGCAGAGTTCCTCGAAACGGGCACGTGTAAGGGAAGTG 87271 Query 517844 ACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 || || ||||| || || |||| ||||| | ||| |||| || |||| | ||| Sbjct 87272 ----TAGAAGTCAATACCCTCATACAAGGAATCGATTTCGATCGAGGTCTGAGCGGCAGA 87327 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 ||| | | ||| || |||||||| || || || Sbjct 87328 AGACAAAGTACGCTTGGCACGTTCGCAAGCGGT 87360 >seq1215 Length=190718 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| || || || ||||| || |||||||| || | | | |||| Sbjct 137709 TTCTTGTCAAGACCATAGGCCAATGCGGCAGCCGTAGGTTCATTGATGACACGAAGAACA 137650 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | |||||||||||| || || ||||| |||||||| | ||| | || || || || Sbjct 137649 TCAAGACCAGCAATCTGACCAGCGTCTTTCGTGGCTTGACGTTGGGCGTCATTGAAGTAG 137590 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || ||||| || Sbjct 137589 GCAGGGACCGTGATAACAGC 137570 >seq2265 Length=37737 Score = 86.0 bits (94), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| || ||| | |||| || ||||||||||| || || ||| | ||||| || Sbjct 26171 GGTAAAGAGGGCCGTTTGCGAGGTAACTTGATGGGAAAGCGGGTTGATTTTTCTGCTCGA 26112 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 || || |||||| |||||||||| | | | ||||||| |||||||||| Sbjct 26111 ACTGTGATTACTGGTGATCCCAATCTGGAATTGGATGAAGTCGGTGTTCCTC 26060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780671396316358