Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2556 136 4e-27 seq2440 131 2e-25 seq1520 109 6e-19 seq1379 87.8 2e-12 >seq2556 Length=115598 Score = 136 bits (150), Expect = 4e-27 Identities = 367/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||| ||||| || || |||| || || | || || ||| | |||| Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||||| || | || ||||||||||| || ||||| || || |||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || || || || || || || | ||| ||| || || | || || || | | Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 98663 Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 | |||||||| || ||||| || || || || | || || ||||| ||||| | | Sbjct 98664 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 98723 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 || ||||| || | || ||| || || |||| ||| || | | | ||| Sbjct 98724 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 98783 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||||| ||||| || || || || || ||||| | | || || | | Sbjct 98784 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 98843 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || ||||| | |||| | || | || |||||| || || || || ||| || | Sbjct 98844 CTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGG 98903 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCC 19435 |||| ||||| | ||||| | || ||||| || || | ||||| |||| Sbjct 98904 CAAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCC 98963 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | || || ||| | || | || | ||||| ||||| || || || ||||||| Sbjct 98964 AGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTT 99023 Query 19496 TTTTATACATGTTCCATA 19513 | || ||||| | ||||| Sbjct 99024 TCTTGTACATCTGCCATA 99041 >seq2440 Length=22844 Score = 131 bits (144), Expect = 2e-25 Identities = 373/568 (66%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||||| ||||| || || || || | |||||| || | ||| || | |||||| || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 ||| | | ||||||||| || || ||||| || |||||||| || | |||||||| | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 ||| || || | || || || |||||||| || || || | ||| || ||| | || Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTTCCGCA-AAC--GTATG 14364 Query 19131 ATTATT---ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGT 19187 ||| || |||||||||| ||||| || || || | | | || || || Sbjct 14363 ATTGGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGT 14304 Query 19188 CTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || || | ||||| | | | | || || | || ||| | | || | Sbjct 14303 TTCGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAG 14244 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 ||| ||||| || |||||||||||||| || || ||||| ||||| ||||| | Sbjct 14243 CAAAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACG 14184 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||||| | | | || || |||||| | || || |||||||| || || || Sbjct 14183 AGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACC 14124 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAG 19422 || || ||||| || || | ||| | || || || |||||| |||| Sbjct 14123 GTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAG 14064 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 ||||||||| || || | ||||| || | ||| |||||||| |||||||||||| Sbjct 14063 AGC--TGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAA 14006 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCC 19510 || ||| | || ||||| |||| ||||| Sbjct 14005 GATGCCACAGCCTTTTTGTACA-GTTCC 13979 >seq1520 Length=48961 Score = 109 bits (120), Expect = 6e-19 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 18676 TATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCAT 18734 ||||||| |||| |||||||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 5852 TATTCGGATACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATAT-CATGTCCAT 5910 Query 18735 AAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA-GTAGTC 18793 |||||||| || || | ||||| |||| ||| ||| ||| || | | || | |||| Sbjct 5911 GAAATCAAAAGGGTTCCTGACATTGTATAATTTGTTGT-TCCCAAGTGCATTAAGCAGTC 5969 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| | || | || ||| || ||||| ||| ||||||||||||| || | || Sbjct 5970 CATCCGCAATGAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAA 6029 Query 18854 CAGGTAGTGCATCTGTAA 18871 | || | ||||||| || Sbjct 6030 CTGGAATAGCATCTGCAA 6047 >seq1379 Length=51093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||||||||| ||||| ||||| |||||||| || || ||||||||||||| Sbjct 3299 GCTGCTTTTGTTCGCAAATAGTACATTCCAGTCTTCAAGCCCTTCTTCCATCCATAGAAG 3240 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 |||||||| || |||| | ||||| || || ||| ||||| | | |||||| Sbjct 3239 TGCATACTTGTCAATTGACTTGTCGTAGGTGATGCAAAATGGATATTGACACTTTGACTT 3180 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAAT 47164 ||| |||||| | || | || ||||| | ||| | ||| Sbjct 3179 TGACAAATAAACGGCCCACGGTCGGCTGCTAGATCGAGAAT 3139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087418786520