Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1103 172 4e-37 seq1215 122 7e-22 seq1 100 2e-15 seq1017 86.0 5e-11 >seq1103 Length=350735 Score = 172 bits (190), Expect = 4e-37 Identities = 464/709 (65%), Gaps = 18/709 (3%) Strand=Plus/Minus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 |||||||||| | || ||||||||| | ||||| || || | || |||| |||| | Sbjct 87374 TTCGTCGTCTCCGTACCGCTTGCGAACGTGCCAAGCGTACTTTGTCTTCTGCCGCTCAGA 87315 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 || | || ||| | ||||| || | |||||| ||||| | | || | || | | | Sbjct 87314 CCTCGATCGAAATCGATTCCTTGTATGAGGGTATTGACTTCTACACTTCCCTTACACGTG 87255 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 || || || || | || || || || | | || | || || || || | | Sbjct 87254 CCCGTTTCGAGGAACTCTGCCAAGACCTTTTCCGTAGCACTCTCGATCCTGTCGAGAAGG 87195 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | | ||||| ||||||||||| |||| || || |||||||| ||||| ||||| | Sbjct 87194 TCCTTCGCGATTCCAAGATTGATAAGGCCAATGTGCACGAAATTGTCCTTGTCGGTGGTT 87135 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT--------TTCAATGGTAA 552190 | || | |||||| || | || ||| || | | |||||||| || Sbjct 87134 CAACTCGTATTCCT--------CGTATCGTCAAGCTCGTCTCCGACTTCTTCAATGGCAA 87083 Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | || | || |||| || ||||||||||||||||| ||||| || | ||||| Sbjct 87082 GGAGCCCAACAAGAGCATTAACCCTGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGC 87023 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTA 552309 || ||| | || || | ||| ||| || ||| || || | | || | || || Sbjct 87022 TGCGATTTTATCCGGTGACACTTCTGAGAAGACT-CAGGATCTACTTCTCCTCGACGTCT 86964 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 |||| || ||||| ||| | ||||| | ||| ||| | |||||| || ||| | | | Sbjct 86963 CTCCCCTCTCTCTCGGTATTGAAACTGCTGGTGGTGTGATGACTGCACTCATCAAGCGTA 86904 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || ||| | || ||| || ||| || || || || | ||||| ||| ||| Sbjct 86903 ACACCACTGTCCCGACTAAGAAGTCTGAAACCTTCTCAACTTACGCCGATAACCAACCTG 86844 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| || ||| | || || || ||| | |||||| || || || | |||| Sbjct 86843 GTGTGCTCATCCAAGTCTTCGAGGGTGAACGTGCTCGCACTAAGGACAACAACCTCCTTG 86784 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | | || | | ||||| || |||||||| ||||| ||||| ||||| || || | Sbjct 86783 GGAAATTCGAGCTTTCTGGTATCCCACCTGCTCCCCGTGGTGTACCTCAAATCGAGGTCA 86724 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 | ||||| ||||||||||| || || |||||||| |||| |||||| Sbjct 86723 CCTTCGACATCGATGCCAACGGTATCTTGAATGTTTCTGCCGCTGATAA 86675 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 ||||| ||||| ||||| |||||||| | | |||||||||||| |||||||| ||||| Sbjct 88280 TATAGGTGTGTCGGTGTGTGGCAAAACGATCGAGTTGAAATTATCGCCAATGACCAAGGG 88221 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCA 550138 ||| |||| || || || ||||| | ||||| || || | | | | |||||||| Sbjct 88220 AACCGAACGACGCCTTCCTATGTCGCCTTCACCGACGGAGAGCGTCTTATCGGTGATGCC 88161 Query 550139 GCAAAATATCAAG 550151 ||||| | |||| Sbjct 88160 GCAAAGAACCAAG 88148 >seq1215 Length=190718 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || |||||| | ||||||||||| || ||||| ||| Sbjct 137570 GCTGTTATCACGGTCCCTGCCTACTTCAATGACGCCCAACGTCAAGCCACGAAAGACGCT 137629 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| ||| ||||||||||| | |||||||||||||| ||||| ||| | Sbjct 137630 GGTCAGATTGCTGGTCTTGATGTTCTTCGTGTCATCAATGAACCTACGGCTGCCGCATTG 137689 Query 550520 GCATATGGACTTGATAA 550536 || ||||| ||||| || Sbjct 137690 GCCTATGGTCTTGACAA 137706 >seq1 Length=474241 Score = 100 bits (110), Expect = 2e-15 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || |||||| ||||| ||||| | ||||| | Sbjct 254359 AGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGG 254300 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || ||||| ||||| ||||| | ||| || |||||||| || || || Sbjct 254299 CCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCC 254240 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 ||||| ||||| ||| || || ||||| ||||||| Sbjct 254239 TTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAG 254200 >seq1017 Length=59083 Score = 86.0 bits (94), Expect = 5e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||||| |||||| ||| ||||||||| ||||| | | Sbjct 44512 AGACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGT 44571 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||| |||||||||||||| || ||||| |||| || |||||||| ||||||| Sbjct 44572 CCATCCTCAAGTTGTTTTCCAGCGAAAATGAGTCGCTGTTGATCAGGGGGAATTC 44626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029135072436070