Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2440 136 5e-27 seq1520 91.5 2e-13 >seq2440 Length=22844 Score = 136 bits (150), Expect = 5e-27 Identities = 384/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Minus Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 ||||| |||||| || || || || | || ||||| | ||| || | |||||| || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| | | || ||||| | || ||||| || | ||| || ||||| ||||| || | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||| || || | || ||||| ||||||||||| || || ||| ||| || | | Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAGCCGTT--CCGCAA----ACGT 14367 Query 37346 ATAAT---CAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTT-AACACATTCAA 37398 || || | ||| |||||||| | ||| ||| |||| | || | | | Sbjct 14366 ATGATTGGCCGAATCGATCCATTTCAAAGCCCATGTTGC-TTTATTGGCAATAGAAGGGA 14308 Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAA 37458 | ||||| || || || | ||||| || ||| | | | ||||| || | | Sbjct 14307 TGGTTTCGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGA 14248 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | || ||| |||||| || || ||||||||||| || || ||||| || || |||| Sbjct 14247 TAAGCAAAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAAC 14188 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | | |||||||| | || ||| ||| |||| || ||||||||||||| || | Sbjct 14187 AACGAGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAA 14128 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--T 37636 | || || || |||||||| |||| |||| | || || | |||||||| | Sbjct 14127 TACCGTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTAT 14068 Query 37637 TGATA-ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAA 37695 ||| | | | ||||| || || | ||||| || | ||| ||||| || || ||||||| Sbjct 14067 TGAGAGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAA 14008 Query 37696 AACTTGCCAATGCACGTTTATACATCGTCCAAA--TATCAT 37734 || ||||| || ||| |||| ||||| |||||| Sbjct 14007 AAGATGCCACAGCCTTTTTGTACAGTTCCCAAATCTATCAT 13967 >seq1520 Length=48961 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 |||||||| || || | |||||||| | || || | ||| || |||||||| || Sbjct 6190 CATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAAC 6249 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || |||| ||| || | |||||| ||||||||||| || |||||||| || || ||| Sbjct 6250 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 6309 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 || ||||| | |||| ||||| || || ||| Sbjct 6310 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGT 6342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 36900 ACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAAT 36959 ||||| |||| ||||||||||| |||||||| || ||||| | ||||| |||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 36960 GGATT--AGA---TGTATTATATATAGTACTACATGATAATTCCTTCAGAAGCCTATCCG 37014 || || || ||||| || | | || | || | | | || || || | ||||| Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTTGTTC-CCA----AGTGCATTAAGCAGTCCATCCG 5975 Query 37015 CAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAA 37074 ||| || || |||||| | ||||| || ||||| || || || || | | ||||||| Sbjct 5976 CAATGAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAA 6035 Query 37075 TTGCATCT 37082 | |||||| Sbjct 6036 TAGCATCT 6043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592294269749720