Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 118 8e-22 seq2933 104 2e-17 >seq1 Length=474241 Score = 118 bits (130), Expect = 8e-22 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 48557 CACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| ||| || || |||||| ||||| || || ||||| || | ||| | || | Sbjct 254580 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 254521 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 |||||||||| || ||||| |||| |||||||| || | |||| ||| || ||||| Sbjct 254520 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 254461 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||||||| || ||| | | || || || | ||| ||||| | || ||||| | Sbjct 254460 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 254401 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| || || ||||| ||||||||| Sbjct 254400 TTCCGGTCAATGTCTTCACAAAGATCTGCATC 254369 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| ||||| ||||| || ||| | || | || || | |||||| || ||||| Sbjct 254332 TCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAG 254273 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || ||||| || | || | |||||||| || ||||||| || ||| Sbjct 254272 ATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATTG 254213 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||| ||||||||||| || || || ||||| |||||||| || ||| Sbjct 254212 TCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 254153 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 254152 AAGATCTGCAT 254142 >seq2933 Length=244213 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||||||||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 207795 CTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 207736 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | |||| || |||||||| || || || ||| Sbjct 207735 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACATT 207676 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | || ||||| |||||||| | || || || Sbjct 207675 GTCAATAGTGTCAGACGACTCGACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGAC 207616 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 207615 GAAGATCTGCAT 207604 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || || | ||| | || ||||||||||| || ||||| Sbjct 208023 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 207964 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | |||| |||||||||||| ||||| |||||| Sbjct 207963 AATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATT 207904 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| |||||||| || || || | || || || Sbjct 207903 GTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTGCCTGTGAGGGTCTTGAC 207844 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 207843 GAAGATCTGCAT 207832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923472333889