Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 147 1e-29 seq1103 143 2e-28 seq2933 113 3e-19 seq1215 102 5e-16 >seq1 Length=474241 Score = 147 bits (162), Expect = 1e-29 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||||||||| || |||||| | ||||||||| | ||||| Sbjct 254363 ACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGT 254304 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || |||||||||||||| |||||||||||||| |||||||| || || Sbjct 254303 GCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACC 254244 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || ||||||||| || ||| ||||| ||||||| | | | | ||| Sbjct 254243 CTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAA 254184 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| | |||||| || || || || Sbjct 254183 -GGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 254145 Score = 95.1 bits (104), Expect = 8e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||||||||| ||| ||||| || ||||| |||| || || | ||| || | Sbjct 254577 CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCA 254518 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||||||||||| || | ||| ||||| || |||||||| ||||| ||||| |||| Sbjct 254517 ACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAA 254458 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||| |||||| || ||||| |||| Sbjct 254457 TCTTTGCCTTGACATTGTCGATAGTGTCAG 254428 >seq1103 Length=350735 Score = 143 bits (158), Expect = 2e-28 Identities = 451/696 (65%), Gaps = 2/696 (0%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || ||||| |||||||| ||||| || | |||||||| |||| || | Sbjct 87369 CGTCTCCGTACCGCTTGCGAACGTGCCAAGCGTACTTTGTCTTCTGCCGCTCAGACCTCG 87310 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 | ||| | ||||| | | ||| || ||||| | | ||| ||||| | || Sbjct 87309 ATCGAAATCGATTCCTTGTATGAGGGTATTGACTTCTACACTTCCCTTACACGTGCCCGT 87250 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || || || | || || || || | | || | || || || || | || || Sbjct 87249 TTCGAGGAACTCTGCCAAGACCTTTTCCGTAGCACTCTCGATCCTGTCGAGAAGGTCCTT 87190 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||||| || |||| || | | || || |||||||| ||||| || |||||||| Sbjct 87189 CGCGATTCCAAGATTGATAAGGCCAATGTGCACGAAATTGTCCTTGTCGGTGGTTCAACT 87130 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAA 475786 | ||||| || | | | || | || ||||| || || || | Sbjct 87129 CGTATTCCTCGTATCGTCAAGCTCGTCTCCGACTTCTTCAATGGCAAGGAGCCCAACAAG 87070 Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA 475846 || | || |||||||| |||||||| || || |||||||||||||| || |||||||| Sbjct 87069 AGCATTAACCCTGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCGATTTTATCC 87010 Query 475847 GGTCAATCAGACGAGAA-ACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATT 475905 ||| | | ||||| ||| | || | | || | ||||| |||| || || | Sbjct 87009 GGTGACACTTCTGAGAAGACT-CAGGATCTACTTCTCCTCGACGTCTCTCCCCTCTCTCT 86951 Query 475906 AGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCC 475965 ||| ||||||| | ||| || | |||||| || || | | || || || |||| Sbjct 86950 CGGTATTGAAACTGCTGGTGGTGTGATGACTGCACTCATCAAGCGTAACACCACTGTCCC 86891 Query 475966 ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025 || || || || || || ||||| | ||||| ||| | ||| |||||| Sbjct 86890 GACTAAGAAGTCTGAAACCTTCTCAACTTACGCCGATAACCAACCTGGTGTGCTCATCCA 86831 Query 476026 AATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCT 476085 | |||| || |||||| | |||||| || || ||| ||||| | || | || Sbjct 86830 AGTCTTCGAGGGTGAACGTGCTCGCACTAAGGACAACAACCTCCTTGGGAAATTCGAGCT 86771 Query 476086 TGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGA 476145 | ||||| || ||||||||| | || || |||||||| || || || || || || || Sbjct 86770 TTCTGGTATCCCACCTGCTCCCCGTGGTGTACCTCAAATCGAGGTCACCTTCGACATCGA 86711 Query 476146 TGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || ||||| | |||||| |||| |||||| Sbjct 86710 TGCCAACGGTATCTTGAATGTTTCTGCCGCTGATAA 86675 Score = 105 bits (116), Expect = 4e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 474656 TCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATAT 474715 ||||| ||| |||| ||||| ||||| | |||||||||| |||| || ||| Sbjct 87870 TCACCTGAAGAAATATCTTCGATGGTCCTCCTCAAAATGAAAGAAACTGCCGAAGCATTC 87811 Query 474716 CTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCA 474774 || || || | | | || | |||| | || ||||| || || || ||||| ||||| Sbjct 87810 CTCGGCACCACTA-TCACCAACTCAGTCGTGACCGTTCCCGCGTACTTCAATGACTCTCA 87752 Query 474775 ACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAA 474834 |||||| ||||| || || || |||| || | || | ||||| | ||||| ||||| Sbjct 87751 ACGTCAGGCAACCAAGGACGCCGGAACCATATCCGGAATGAATGTCCTCCGTATCATTAA 87692 Query 474835 TGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||||||| || || || |||||||||| ||||| || || Sbjct 87691 CGAACCAACTGCCGCGGCGATTGCTTATGGCCTTGACAAAAA 87650 >seq2933 Length=244213 Score = 113 bits (124), Expect = 3e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || ||||| || || || ||||| || ||| ||||||| || || Sbjct 207824 CGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTG 207765 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || | ||||| ||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 207764 CGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCT 207705 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || || || |||||| |||||||| |||| | | | ||||| Sbjct 207704 TCCTTGTCCTGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGA-CCTCAAG 207646 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| ||||| || || Sbjct 207645 AGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTG 207607 >seq1215 Length=190718 Score = 102 bits (112), Expect = 5e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || || || || || || ||||| | ||||||||||| || ||||| || Sbjct 137570 GCTGTTATCACGGTCCCTGCCTACTTCAATGACGCCCAACGTCAAGCCACGAAAGACGCT 137629 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||| |||||| ||||| | ||| | || |||||||| || || |||||| | Sbjct 137630 GGTCAGATTGCTGGTCTTGATGTTCTTCGTGTCATCAATGAACCTACGGCTGCCGCATTG 137689 Query 474857 GCTTATGGTCTTGATAAGAAT 474877 || ||||||||||| |||||| Sbjct 137690 GCCTATGGTCTTGACAAGAAT 137710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268048670965364