Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2556 147 3e-30 seq2440 116 5e-21 seq1520 107 3e-18 seq1 100 4e-16 seq2933 87.8 3e-12 >seq2556 Length=115598 Score = 147 bits (162), Expect = 3e-30 Identities = 365/551 (66%), Gaps = 7/551 (1%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 |||||| ||||| || |||||||||||||||| | || | ||||| | | |||| Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | || |||| ||| || || || ||||| | |||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 || ||||| || ||| ||||| || | ||||| || |||||| || || || ||| Sbjct 98605 GATTCCCTCGACAGCA-GCGAATGCCACCAATCTCTCTGCAAAAGTG-CTTCGTTTGTCA 98662 Query 18336 G-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||||||| | ||||| || ||| || |||||||| | ||||| || Sbjct 98663 GATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCG 98722 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | || | || | || || ||| || | || || ||||| | || ||| || Sbjct 98723 TCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAA 98782 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||||||||| | | ||||||| ||| || || | |||||| | | ||||| | Sbjct 98783 GTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCT 98842 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | |||| | || | || ||| || || || |||||||||| | Sbjct 98843 GCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 98902 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTC 18631 || || ||||| | |||| | |||||||| || | || || | | | |||| Sbjct 98903 GCAAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTC 98962 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || || | | ||| | | || |||| |||||||| ||||| || |||| ||| || Sbjct 98963 CAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCT 99022 Query 18692 TGTTTGTACAT 18702 | |||||||| Sbjct 99023 TTCTTGTACAT 99033 >seq2440 Length=22844 Score = 116 bits (128), Expect = 5e-21 Identities = 194/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 18428 ATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGA 18487 ||||| || | ||| | |||||||||||| || ||||| || ||||||| || ||| Sbjct 14260 ATATAGGTTTGGATAAGCAAAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGA 14201 Query 18488 AAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAA 18547 || | || || | | ||| || ||| || || |||| ||||| | ||| || Sbjct 14200 AAGCCGTAGAAACAACGAGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAG 14141 Query 18548 TTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGT 18607 || ||||| || |||||||| || | || || || || | |||| || ||| || Sbjct 14140 TTTTCATTGACAATACCGTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGA 14081 Query 18608 TTTTCATTATCCTTGAGA---TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCT 18664 ||||| || |||||| | ||||| || | | ||||| || ||||| |||||| Sbjct 14080 CGTTCATCATTATTGAGAGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCT 14021 Query 18665 TCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 ||| |||||||||||||| | |||| |||||||| || Sbjct 14020 TCCACTGTCCAAAAAGATGCCACAGCCTTTTTGTACAGTT 13981 >seq1520 Length=48961 Score = 107 bits (118), Expect = 3e-18 Identities = 358/555 (65%), Gaps = 15/555 (3%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || ||||| | |||||||| | | || | |||||| ||| || ||| Sbjct 6190 CATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAAC 6249 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || |||| || || | |||||| | ||||||||| | |||||| | || || || Sbjct 6250 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 6309 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG-CTCAG 18336 || || || | | | ||| || | | || ||| ||||| | || || | || | Sbjct 6310 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTGATCGTCTTCG 6369 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| || |||||||| | ||| || || || || | || |||| | | Sbjct 6370 -ATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 6428 Query 18397 AAACAA--ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||||| || ||| || | || ||||| ||||| || | || | |||||| || Sbjct 6429 GAACAAGAATGATCGTT--CGAAGGGATCTTGGATATACGTTTGAATCAGCAAAGAGTAA 6486 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||| ||||| ||| ||||||| | ||| || | ||| || |||| |||||| | Sbjct 6487 GTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCG 6546 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| || ||| | || | ||| || || || || |||||||| | | Sbjct 6547 ACCTGAATTTCACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGACGCA 6606 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAA------TGTTTTTCATTATCCTTGAGATTG 18628 ||||||||||| | ||| ||||| | ||| | || | || | ||| Sbjct 6607 GCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTT---CATGCGGTTG 6663 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| || | | ||| ||||| || || | |||||| | ||||| || || | || Sbjct 6664 TTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGCCTCA 6723 Query 18689 GCCTGTTTGTACATT 18703 || | ||||||| || Sbjct 6724 GCTTTTTTGTACCTT 6738 >seq1 Length=474241 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| ||||| || || || || || || || || Sbjct 254141 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 254200 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| || || || ||||| || || || ||||| || || Sbjct 254201 TGATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 254260 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | ||| || |||||||| |||||| | | ||| | || |||||||| Sbjct 254261 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 254320 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| ||||| |||| |||||| Sbjct 254321 TATCCAAAAAGAATCGACTCTTCAT 254345 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| ||||| || || || | || ||||| |||| Sbjct 254370 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 254429 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 254430 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 254489 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | || ||| | || | || || ||||| Sbjct 254490 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 254549 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 254550 ATTCAGAAAGAGTCTACCCTTCAT 254573 >seq2933 Length=244213 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || ||||| || || || || ||||| ||| Sbjct 207376 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 207435 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 207436 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 207495 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || | || | || || ||||||||||||||| Sbjct 207496 CAACGACTAATCTTCGCTGGCAAGCAGCTCGAAGAT 207531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844161418800