Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2265 89.7 2e-12 seq2671 84.2 6e-11 >seq2265 Length=37737 Score = 89.7 bits (98), Expect = 2e-12 Identities = 219/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 302544 TACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAAT 302603 |||||| |||||||| || ||||| |||||| | || | || ||||| || || Sbjct 24288 TACGGTTCCATCATAACAAACCATAACGTCTTCGAGGGCTTTCACCAATCGACGTTGTAT 24347 Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663 ||| || ||| | || || || || ||||| || ||||| | || || |||| || Sbjct 24348 ATATCCGGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCTCGCCCCGCCATGGC 24407 Query 302664 ATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 ||||||||| | ||| | || || || | | | | ||| |||| |||||||| || Sbjct 24408 ATGGAAGAAGAACTCCTGAGGGGTGAGACCTCGTAGATAAGAGTTCTCTACGAAACCCCG 24467 Query 302724 CGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCC 302780 | ||| || |||| || |||||||||||| ||||| || | || |||| Sbjct 24468 GGACTCAGGACTGAAATCATC---CTTGGTAAAGTGAGGCAGCGTGCGGTGGCGGAAGCC 24524 Query 302781 GTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAAT 302840 | |||||||| || || ||| |||||||| | || | |||||| || || Sbjct 24525 AAAAGGGATACGACGCCCTTCCACGGATTGCTGTCCTACACAAACAGACATCTGGGAGAT 24584 Query 302841 ATT--TAAATCACTGCCCTTGGAGCCAGC 302867 ||| | ||| | || ||||| ||||| Sbjct 24585 ATTGATGAATGA--ACCTTTGGATCCAGC 24611 >seq2671 Length=12064 Score = 84.2 bits (92), Expect = 6e-11 Identities = 218/329 (66%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 302544 TACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAAT 302603 |||||| |||||||| || ||||| |||||| | | || | | | ||||| || || Sbjct 10011 TACGGTTCCATCATAACAAACCATAACGTCTTCGAGAGCTTTCACTGATCGACGTTGTAT 9952 Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663 ||| |||||| | | || || || || ||||| || ||||| | | || |||| || Sbjct 9951 ATATCCAGTTTTGGCAGTCTTGACTGCAGTATCGATGAGACCTTCCTGCCCCGCCATGGC 9892 Query 302664 ATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 ||||||||| | ||| | || || || | | | | ||| |||| |||||||| || Sbjct 9891 ATGGAAGAAGAACTCCTGAGGGGTGAGACCTCGTAGATAAGAGTTCTCTACGAAACCCCG 9832 Query 302724 CGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCC 302780 | ||| || |||| || | |||||||| | ||||| || | || |||| Sbjct 9831 GGACTCAGGACTGAAATCATC---CGTGGTAAAGCGAGGCAGCGTGCGGTGGCGGAAGCC 9775 Query 302781 GTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAAT 302840 | |||||| | || || ||| |||||||| | || | |||||| || || Sbjct 9774 AAAAGGGATATGACGCCCTTCCACGGATTGCTGTCCTACACAAACAGACATCTGGGAGAT 9715 Query 302841 ATT--TAAATCACTGCCCTTGGAGCCAGC 302867 ||| | ||| | || ||||| ||||| Sbjct 9714 ATTGATGAATGA--ACCTTTGGATCCAGC 9688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760216131491