Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq886 96.9 4e-14 >seq886 Length=61200 Score = 96.9 bits (106), Expect = 4e-14 Identities = 200/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| ||| || || |||||||| | ||||| || || | ||| ||||| | | Sbjct 12493 TATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATC 12434 Query 869232 CGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 | |||||||| | ||||||||||| ||| ||| ||| ||||| || ||||| || || Sbjct 12433 CACGCTTCTTCATCCAAAAGATGGACGC-GAAGGAGCCAGAGAAGAAAATGCCTTCAACA 12375 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTC 869350 || |||||| | | ||| |||||| | || ||| | ||| | ||||||| | Sbjct 12374 GCAGCAAAGGCTACGAGACGCTCGCCGAA--AACCGA-GTGCTCATCACTGATCCAGCGC 12318 Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGG 869410 | ||||| |||||||| | | | | || | || ||||| || ||| ||| Sbjct 12317 AGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCAAAAAGGAAA 12258 Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||| | ||||| |||| || |||||||| || || || || ||||| Sbjct 12257 TCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTC 12205 Score = 93.3 bits (102), Expect = 5e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| ||| ||| ||| ||| |||||||| ||||| || | |||||||||| Sbjct 12853 GCCTTTGAGTAATCGGACACCCGCTTCTCAAAAAAGTTTGTCTTCCCTTGGAGCGAGATC 12794 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || ||||| ||| | | ||||| | || Sbjct 12793 ATGTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTACAACTTCTTGTTGCCGAGAGCGACG 12734 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || || ||||| ||||||||||| || || ||||| | |||||||| ||||| Sbjct 12733 AGTAGTCGATCGGCAACAAACTCGATATATTGACACATCAATGTTGCGTTCATACCGAT 12675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106889477169631