Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq886 132 8e-25 >seq886 Length=61200 Score = 132 bits (146), Expect = 8e-25 Identities = 228/328 (70%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||| || || |||||||| | ||||| | || || || || ||||| | || |||| Sbjct 12486 ACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG-CCAGGCATTAATCCACGCT 12428 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| | ||||||||||| ||| ||| ||||| || ||||| || || || |||| Sbjct 12427 TCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAA 12368 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 || | ||||| |||||| | ||| || | ||| | ||||||| || |||| Sbjct 12367 AGGCTACGAGACGCTCGCCGAAAA---CCGAGTGCTCATCACTGATCCAGCGCAGAGCCC 12311 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 |||| ||||| | | | | || | || ||||| || ||| ||| || | Sbjct 12310 ACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCAAAAAGGAAATCACGTT 12251 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 |||| ||||| |||| ||| ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 12250 CGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCAGAGTGAATGTTCT 12191 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||| || || ||||| Sbjct 12190 CCATCATAATCTGGAACCCGTAGAAGCA 12163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915922702210877