Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13]
3,043 sequences; 40,928,581 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2933 127 1e-24
seq1 102 5e-17
>seq2933
Length=244213
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| ||||||||||||||| ||||| || ||| |||| ||||
Sbjct 207587 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 207528
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||| |||||||| || || | || | |||||||| ||
Sbjct 207527 TCGAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 207468
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||| || || ||| | |||| || | |||||| || | || || ||
Sbjct 207467 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 207408
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| |||||||||||||| |||||||| ||||||
Sbjct 207407 TTGCCCGTGAGGGTCTTAACAAAGATTTGCATG 207375
Score = 114 bits (126), Expect = 8e-21
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||| |||||||| || || || || || |||| ||||
Sbjct 207815 AGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCC 207756
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || || || || || ||||| ||||| |||| | || ||||||||
Sbjct 207755 TCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCC 207696
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| ||||| | || | ||| | |||||| |||| || || |||
Sbjct 207695 TGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGACCTCAAGAGTGATCGTC 207636
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||||||||| ||||| || ||||||||||||
Sbjct 207635 TTTCCCGTGAGTGTCTTGACGAAGATCTGCATG 207603
>seq1
Length=474241
Score = 102 bits (112), Expect = 5e-17
Identities = 150/210 (71%), Gaps = 8/210 (4%)
Strand=Plus/Minus
Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831
|| |||| ||| ||| ||||||||||||||||| || || | || |||| ||||
Sbjct 254575 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 254516
Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891
|||||||| || ||||||| || || ||||| | || | || || ||||| | ||
Sbjct 254515 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 254456
Query 34892 TTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTT 34947
||| ||||| || | ||||| ||| | |||||| |||| || || |||||
Sbjct 254455 TTTGCCTTGAC--AT--TGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTT 254400
Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || | ||||| ||||||||||||||
Sbjct 254399 TCCGGTCAATGTCTTCACAAAGATCTGCAT 254370
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|| || || || ||||| ||||| || |||| |||| || || |||||||| || |||
Sbjct 254332 TCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAG 254273
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|| || ||||| ||||| | || | |||||||| || | || ||| || ||
Sbjct 254272 ATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATTG 254213
Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966
| || | ||| | ||| || || | ||| ||||||||||| || | ||||| |||
Sbjct 254212 TCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 254153
Query 34967 AAGATCTGCAT 34977
|||||||||||
Sbjct 254152 AAGATCTGCAT 254142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325680721173617
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |