Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq2933 107 1e-18 >seq1 Length=474241 Score = 129 bits (142), Expect = 5e-25 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 29577 CACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCAT 29635 |||||| |||||| || || ||||| ||||||||||| || | || || ||| ||| | Sbjct 254580 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 254521 Query 29636 CGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695 | | || || |||||| | ||||| | || || || || ||||| || |||||||| | Sbjct 254520 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 254461 Query 29696 GTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 | ||| |||| |||||| | || | |||||||||| || || |||||||| || || Sbjct 254460 G-AATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTC 254402 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| |||||||| Sbjct 254401 TTTCCGGTCAATGTCTTCACAAAGATCTGCAT 254370 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || ||||||||||| || |||||||||| || ||||| Sbjct 254357 ACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCC 254298 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || | | ||| || || || || |||||||| || Sbjct 254297 ATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTT 254238 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| |||| || ||| | || | || ||||| || || || | || | Sbjct 254237 ATCCTG-AATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGA 254179 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || ||||| ||||||||| Sbjct 254178 TGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 254141 >seq2933 Length=244213 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | || || || || ||||| ||||| || ||||| | | Sbjct 207830 CCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAA 207771 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || ||||||||| | || | | ||| || || |||||| Sbjct 207770 AGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGA 207711 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| |||||| | || | ||||||||| || || Sbjct 207710 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGACC 207651 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | || || || || |||||||| Sbjct 207650 TCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 207604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204913544063