Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1103 181 8e-40 seq1215 91.5 1e-12 seq2265 89.7 4e-12 >seq1103 Length=350735 Score = 181 bits (200), Expect = 8e-40 Identities = 461/693 (67%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||||||||||| ||||| | ||||| |||||||| | || || ||||| || ||| Sbjct 86675 TTATCAGCGGCAGAAACATTCAAGATACCGTTGGCATCGATGTCGAAGGTGACCTCGATT 86734 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||||||||| || | | ||| | || || || Sbjct 86735 TGAGGTACACCACGGGGAGCAGGTGGGATACCAGAAAGCTCGAATTTCCCAAGGAGGTTG 86794 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || |||||| |||||||||||||| | |||||| || ||| ||| ||| Sbjct 86795 TTGTCCTTAGTGCGAGCACGTTCACCCTCGAAGACTTGGATGAGCACACCAGGTTGGTTA 86854 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || | ||||||| || | || || ||| || | || ||||| | | || Sbjct 86855 TCGGCGTAAGTTGAGAAGGTTTCAGACTTCTTAGTCGGGACAGTGGTGTTACGCTTGATG 86914 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | ||||| | ||||||||| ||||| | ||| ||||| || |||| ||| || | Sbjct 86915 AGTGCAGTCATCACACCACCAGCAGTTTCAATACCGAGAGAGAGGGGAGAGACGTCGAGG 86974 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || | | || ||| || ||| ||| | ||| | ||| || ||||| | |||| Sbjct 86975 AGAAGTAGATCCTGAGTCTTCTCAGAAGTGTCACCGGATAAAATCGCAGCTTGGACAGCA 87034 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || |||||||| |||||||| |||| | | || | | || |||||||| Sbjct 87035 GCACCGTAGGCAACAGCCTCATCAGGGTTAATGCTCTTGTTGGGCTCCTTGCCATTGAAG 87094 Query 281837 AAATTTGAAAGAAG-TTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | || | || ||| | ||| ||||||||||| ||| || || || | |||| Sbjct 87095 AAGTCGGAGACGAGCTTGACGATACG--AGGAATACGAGTTGAACCACCGACAAGGACAA 87152 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 |||| ||||| | | ||||| | || ||||| | || || || || || || | Sbjct 87153 TTTCGTGCACATTGGCCTTATCAATCTTGGAATCGCGAAGGACCTTCTCGACAGGATCGA 87212 Query 281955 GACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTG 282010 || ||| | || | |||| || ||||| ||||| || | ||||| |||| Sbjct 87213 GA-GTGCTACGGAAAAGGTCTTGGCAGAGTTCCTCGAAACGGGCACGTGTAAGGGAAGTG 87271 Query 282011 ACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 || || ||||| || || |||| ||||| | ||| |||| || |||| | ||| Sbjct 87272 ----TAGAAGTCAATACCCTCATACAAGGAATCGATTTCGATCGAGGTCTGAGCGGCAGA 87327 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 ||| | | ||| || |||||||| || || || Sbjct 87328 AGACAAAGTACGCTTGGCACGTTCGCAAGCGGT 87360 Score = 87.8 bits (96), Expect = 1e-11 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 |||||| | |||||| |||||||| |||| ||| ||||| || || ||| |||| | Sbjct 201853 CAAAAGGGAAACATCGAAAGTTCCACCTCCCAAATCGAAAATGAGGACGTTCTTTTCGGT 201794 Query 282325 GTCTTGGTTTTTA-TCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | ||| || || ||||| || |||| ||| ||||||||||| ||||| || || | Sbjct 201793 TT-TTGATTGACGGTCGAGACCGTAAGCAATAGCGGCAGCAGTTGGCTCATTGATGATAC 201735 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 | ||||| || ||||| || || || ||||| || || | | || || |||| Sbjct 201734 GGAGAACATCGAGGCCAGCGATAGCACCAGCGTCTTTTGTTGCCAGACGCTGAGAGTCGT 201675 Query 282444 TAAAATATGCAGGAACA 282460 | || || ||||| ||| Sbjct 201674 TGAAGTAGGCAGGTACA 201658 >seq1215 Length=190718 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| || || || ||||| || |||||||| || | | | |||| Sbjct 137709 TTCTTGTCAAGACCATAGGCCAATGCGGCAGCCGTAGGTTCATTGATGACACGAAGAACA 137650 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | |||||||||||| || || ||||| |||||||| | ||| | || || || || Sbjct 137649 TCAAGACCAGCAATCTGACCAGCGTCTTTCGTGGCTTGACGTTGGGCGTCATTGAAGTAG 137590 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || ||||| || Sbjct 137589 GCAGGGACCGTGATAACAGC 137570 >seq2265 Length=37737 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 |||||||| || ||| | |||| || |||||||||||||| || ||| | ||||| || Sbjct 26171 GGTAAAGAGGGCCGTTTGCGAGGTAACTTGATGGGAAAGCGGGTTGATTTTTCTGCTCGA 26112 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||||| ||| | | | ||||||| |||||||||| || ||| Sbjct 26111 ACTGTGATTACTGGTGATCCCAATCTGGAATTGGATGAAGTCGGTGTTCCTCGCAGTATC 26052 Query 432408 GC 432409 || Sbjct 26051 GC 26050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740481001559718