Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq2933 116 7e-21 seq1017 91.5 3e-13 >seq1 Length=474241 Score = 188 bits (208), Expect = 1e-42 Identities = 172/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || ||||| |||||||| || ||||||||||| || ||| | | || Sbjct 254357 ACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCC 254298 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| || |||||||||||||| || | |||||| || ||||| || || ||||| Sbjct 254297 ATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTT 254238 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||||| || ||||| ||||| |||||| | || || ||||| || || Sbjct 254237 ATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGAT 254178 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| ||||| ||||||||| Sbjct 254177 GGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 254141 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| |||||||| || ||||| ||||| || | | ||| || || | || Sbjct 254572 TGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGC 254513 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | | ||||| || ||||| || ||||| || || ||||||||| Sbjct 254512 TTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTT 254453 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || ||| || || || || | ||| |||||||| || ||| Sbjct 254452 GCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTC 254393 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 254392 AATGTCTTCACAAAGATCTGCAT 254370 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | |||||||||||||| ||||| || || || ||||| ||| | | ||| Sbjct 254129 ACGAAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACC 254070 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 || || ||||| ||||| |||||||| | || |||||||| ||||| || Sbjct 254069 ATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGAAT 254019 >seq2933 Length=244213 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || || ||||| || || ||||| || || | | ||| || || | || Sbjct 208035 GTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTG 207976 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || |||||||| || || | || || || || || || || ||||| || || ||||| Sbjct 207975 CTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTT 207916 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || |||||||| ||||| || || | || || |||| ||| |||||||||||||| Sbjct 207915 CGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTGCCTGT 207856 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 207855 GAGGGTCTTGACGAAGATCTGCAT 207832 >seq1017 Length=59083 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| |||||||| || || ||||||||||| || || |||||| ||| | | || Sbjct 44514 ACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCC 44573 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 || || |||||||||||||| || || |||| |||||||| || || |||| Sbjct 44574 ATCCTCAAGTTGTTTTCCAGCGAAAATGAGTCGCTGTTGATCAGGGGGAATTC 44626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981788920091577