Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 105 4e-18 seq2933 98.7 7e-16 seq2786 82.4 5e-11 >seq1 Length=474241 Score = 105 bits (116), Expect = 4e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33540 CACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| ||| || || |||||| || ||||| || || || || || || | || | Sbjct 254580 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 254521 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 |||| || ||||| ||||| ||||||||||| || || | || | ||||||||||| Sbjct 254520 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 254461 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| || || | |||| ||| | ||||| || || || |||| |||||||| Sbjct 254460 GAATCTT-TGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTC 254402 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || |||||||||||||| Sbjct 254401 TTTCCGGTCAATGTCTTCACAAAGATCTGCAT 254370 >seq2933 Length=244213 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || ||||| ||| || || |||||||||||||| || ||||| | || | Sbjct 208042 CACCAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCT 207983 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 |||| || || || |||||||| | ||||||||| || |||| | || || ||||| Sbjct 207982 CCAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCT 207923 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 || ||| | | |||| ||| | |||||| || || || || | || ||||| Sbjct 207922 GGATCTTC-GCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTC 207864 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| | || || || |||||||||||| Sbjct 207863 TTGCCTGTGAGGGTCTTGACGAAGATCTGCATA 207831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || |||||||| || || ||||| | || ||||| || || || ||||| Sbjct 207795 CTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 207736 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | ||| || || || |||| | |||||| ||||| |||||| || | ||| Sbjct 207735 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGA-CAT 207677 Query 33678 AGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| ||||| || || || |||| |||||||| || || || | || || | Sbjct 207676 TGTCAATAGTGTCAGACGACTCGACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGA 207617 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 207616 CGAAGATCTGCAT 207604 >seq2786 Length=9315 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || ||||| ||| || || || |||||||||| | ||||| | || | Sbjct 1528 CACCAAGGTGAAGAGTCGGCTCCTTCTGAATATTGTAATCGG---GCGTGCGACCATCCT 1584 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 |||| || || || |||||||| | ||||||||| || |||| | ||| || ||||| Sbjct 1585 CCAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCT 1644 Query 33659 CAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 |||||| || | ||| |||| |||||| | || || || | || |||| Sbjct 1645 GGATTTTCGCCTTTA-CATTGTCAATGGTGTCCGACAACTCAACCTCCAGAGTAATCGCC 1703 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | || || || ||||||||||| Sbjct 1704 TTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 1735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691809498560