Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2933 113 1e-19 seq1 109 1e-18 seq2786 84.2 5e-11 >seq2933 Length=244213 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||||||||||||||| || || ||| ||||| |||| Sbjct 207391 AAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCAGACACGATCGACAAC 207450 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || ||| |||| |||||| Sbjct 207451 GTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAACAACGACTAATCTTC 207510 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||||||| | || | | || |||||| | ||||| ||||| Sbjct 207511 GCTGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAACATTCAGAAGGAGTCA 207570 Query 206365 ACTCTTCACCTTGTT 206379 || |||||||||||| Sbjct 207571 ACCCTTCACCTTGTT 207585 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || ||||| ||| |||| || || || ||| Sbjct 207835 CAGATCTTCGTCAAGACCCTCACAGGCAAGACGATTACTCTGGAGGTTGAGTCGTCGGAC 207894 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||| || || || || || ||| ||| ||| || Sbjct 207895 ACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 207954 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| ||||| | || | ||||||||||| || Sbjct 207955 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAACATC 208014 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| ||||| ||||||||||||| Sbjct 208015 CAGAAGGAGTCGACTCTTCACCTTG 208039 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| ||||||||| | || || || |||||| Sbjct 207607 CAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTCGAGTCGTCTGAC 207666 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || || ||||| ||| ||| ||| ||| Sbjct 207667 ACTATTGACAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAACAA 207726 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| ||||| | || | | |||||||| | Sbjct 207727 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAATATT 207786 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| || || |||||||| | | |||||| Sbjct 207787 CAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGA 207825 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||||||||| || ||||| ||||| | || ||||||| | || | ||||||||| Sbjct 207585 AACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTC 207526 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| || ||||||||| Sbjct 207525 GAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGA 207492 >seq1 Length=474241 Score = 109 bits (120), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| ||||||||| | || || || ||||||| Sbjct 254373 CAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCTGAC 254432 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || |||||||| ||| || ||| || Sbjct 254433 ACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAACAG 254492 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||||||||| ||||| | || | | || || ||| | Sbjct 254493 CGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAACATT 254552 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||||||||| ||||| |||| |||| |||| Sbjct 254553 CAGAAAGAGTCTACCCTTCATCTTG--GTGAGTCTTC 254587 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | |||||| |||||||| || ||||| |||| |||||| || | | ||| Sbjct 254362 CGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTG 254303 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| ||||||||||| || |||||||| |||||||| Sbjct 254302 CGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTG 254259 >seq2786 Length=9315 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/205 (69%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||||||||| |||| ||| |||| || || || ||| Sbjct 1732 CAGATCTTCGTCAAGACCCTCACAGGAAAGGCGATTACTCTGGAGGTTGAGTTGTCGGAC 1673 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || || || || || || || || ||| ||| || Sbjct 1672 ACCATTGACAATGTAAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 1613 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| ||||| | || | |||||||||| | Sbjct 1612 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCAC---GCCCGATTACAATATT 1556 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| ||| | ||||||||||||| Sbjct 1555 CAGAAGGAGCCGACTCTTCACCTTG 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181774722653603