Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq886 163 4e-34 seq2556 129 8e-24 >seq886 Length=61200 Score = 163 bits (180), Expect = 4e-34 Identities = 370/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || |||||||||||||| || ||||| || || ||| | || Sbjct 11949 GATATGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATT 12007 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | ||| ||||| ||| ||| ||| ||| || |||||| Sbjct 12008 TATCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGACAGCGAACGATTCTTCATCT 12067 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | |||||||| || ||| |||||| |||||||| || |||||| || || Sbjct 12068 CCCGTGTCCTCGCGTTCTTT-GCCGCCTCTGATGGCATTGTTAACGAGAATCTTCTCGAA 12126 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| || || || | | |||||||||| || |||||||||||||| Sbjct 12127 CGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATG 12186 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| |||||||| || ||||| || || |||||||| ||| |||| ||||| Sbjct 12187 ATGGAGAACATTCACTCTGAGACTTACTCTCTTCTCATCGACACATACATCAAAGACCCT 12246 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 ||||| || ||| ||| || ||||| || | || | | | | |||||| Sbjct 12247 GTCGAACGTGATTTCCTTTTTGATGCTATCGAGACCATTCCTTGCATCAAGCGCAAGGCC 12306 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 || ||||| || ||||||| | || | |||| || | |||||| ||||| | Sbjct 12307 GAGTGGGCTCTGCGCTGGATCAGTGATGA-GCACTCG-GTTTTCGGCGAGCGTCTCGTAG 12364 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTC 1456249 |||||| || || || ||||| || ||||| ||| ||| ||| ||||||||||| | Sbjct 12365 CCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTCCATCTTTTGGATG 12423 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTCGCGACG 1456308 |||||||| || | ||||| || ||| || || | ||||| | |||||||| || | Sbjct 12424 AAGAAGCGTGGATTAATGCCTGG-CTT-GGCGTTCTCAAACGAGCTCATCAGTCGTGATG 12481 Query 1456309 A 1456309 | Sbjct 12482 A 12482 >seq2556 Length=115598 Score = 129 bits (142), Expect = 8e-24 Identities = 365/550 (66%), Gaps = 23/550 (4%) Strand=Plus/Minus Query 1455777 TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTC 1455836 ||||| | |||||| | |||| | || || || || |||||| | || ||| | |||||| Sbjct 99041 TATGGCAGATGTACAAGAAAG-CAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 98983 Query 1455837 GGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || ||| ||||| || | | | | |||||||| |||||||||| Sbjct 98982 ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACC 98923 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 || ||||| || || ||| |||||| || || |||||| ||| || ||| | || Sbjct 98922 CATGTCCTTGCATTCTTT-GCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCG 98864 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||| || || || ||| | ||||| || | ||||| |||||||| || || Sbjct 98863 CTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGAT 98804 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 |||||| | || |||||||| ||||| || || ||||| || ||||||||||| | | Sbjct 98803 GGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATC--TT 98746 Query 1456074 CGAGAAGGACCACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || | || ||| |||| ||| || || || | |||| | | | || ||| Sbjct 98745 AATCAACGCGCATATCTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCC 98686 Query 1456132 GACTGGGCGATGAAGTGGA----TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||| | || |||| | | || || | || ||||| ||| | | Sbjct 98685 GACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACT------TTTGCAGAGAGATTG 98632 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | || || || |||||||| |||||||| || || ||| |||| || ||| Sbjct 98631 GTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGG 98572 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT-TCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | |||||||||||||| ||||| || || || || | ||||| | ||||| || | Sbjct 98571 TTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCA--AACGAGCTCATCAGCCGAG 98514 Query 1456306 ACGAAGTTTT 1456315 | |||| ||| Sbjct 98513 ATGAAGGTTT 98504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177517697056966