Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq886 179 5e-40 seq2556 165 1e-35 seq2440 163 4e-35 seq1520 116 5e-21 >seq886 Length=61200 Score = 179 bits (198), Expect = 5e-40 Identities = 378/562 (67%), Gaps = 14/562 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| ||| | |||||||| | ||| || | ||||| || || | | Sbjct 12507 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 12448 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||||| |||||||| || | |||||| |||| || || || ||||| ||||| Sbjct 12447 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 12388 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGT-ATCATTATG 39792 |||||||| || || ||||| || || || | ||| ||| || | || |||| | Sbjct 12387 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGCTCATCACT 12328 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | | ||||| || || || ||| | ||||| || || || ||||||| Sbjct 12327 GATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATC 12268 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| || ||| ||| || ||||| | ||||| || || | ||| || | Sbjct 12267 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 12208 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || || ||||| || ||| ||||| || ||||| || || | ||| |||| | Sbjct 12207 CTCAGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 12148 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||||| || | || | ||| | ||| || || || || |||||| ||||| Sbjct 12147 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGC 12088 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT-------TTAT 40085 ||| || || | ||| | || || || ||| | ||||| | || | Sbjct 12087 AAAGAACGCGAGGACACGGGAGATGAAGAATCGTTC----GCTGTCATTCAGGCGGTTGT 12032 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 ||||||||| | |||||||||| ||| | ||||| || ||||| || || ||||| | Sbjct 12031 TCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGG 11972 Query 40146 CCTTTTTGTACATGTTCCATAT 40167 |||| |||||||| | |||||| Sbjct 11971 CCTTCTTGTACATTTGCCATAT 11950 >seq2556 Length=115598 Score = 165 bits (182), Expect = 1e-35 Identities = 371/556 (67%), Gaps = 6/556 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| || ||||| || ||||||| || || | ||||| ||| | || || Sbjct 98486 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGG 98545 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| || || ||||| || | ||| || |||| ||| || || |||||||| ||| Sbjct 98546 CCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAG 98605 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA---CTTGTATCATTATGT 39793 || || || || || || ||||| || | ||||||| | || ||| | | | | Sbjct 98606 ATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGAT 98665 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| || | ||||| || ||||| ||| | || || ||||||||||| || | Sbjct 98666 ATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCG 98725 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 |||||||| || || | ||| || || |||||||| || | |||| || || Sbjct 98726 AAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTT 98785 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| | |||||| ||| || || || || ||||| | | || |||| | Sbjct 98786 TCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCT 98845 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || |||| | ||| || |||||| ||||| || || ||| |||||| Sbjct 98846 TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCA 98905 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | ||||| | || |||| || || | ||| | |||||| Sbjct 98906 AAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCAG 98965 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||| | | | || | ||||| | ||||| ||||| || ||||| || Sbjct 98966 TCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTTC 99025 Query 40151 TTGTACATGTTCCATA 40166 |||||||| | ||||| Sbjct 99026 TTGTACATCTGCCATA 99041 >seq2440 Length=22844 Score = 163 bits (180), Expect = 4e-35 Identities = 378/566 (67%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 ||||| ||| ||||||||||| || | |||||||| | ||| || | ||| || || Sbjct 14540 AAACAGTAAACAGGCGAAGTCGGTGTGCATTCCCTCATCACGACTGATGAGTTCATTTGA 14481 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 ||| | || |||||||| || || | || || | ||| || || || ||||| || | Sbjct 14480 AAACGAAAGACCAGGCATAAGCCCCCTTTTCTTCAACCAGAAGATTGCGGCAAATGAACT 14421 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC 39786 ||| || |||| || || || ||||||||||| || || | |||| || |||| Sbjct 14420 AGAGAAAAAGAGTCCCTCAACAGCTGCAAATGCGACGAG--CCGTTCCGCAA-ACGTATG 14364 Query 39787 ATT------ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 ||| || ||||| ||| ||||| ||||| || | | |||| || || Sbjct 14363 ATTGGCCGAATCGATCCATTTCAAAGCCCATGTTGCTTTATTGGCAATAGAAGGGATGGT 14304 Query 39841 TTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 ||| || || ||| | | | || || || | | || ||| || | || | Sbjct 14303 TTCGATGGCGGAAAATAAGTGGTTTTGTTGTTCGGTGTTGGGAATATAGGTTTGGATAAG 14244 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 || | |||||| || ||||| || ||||| ||| || ||||| ||||| ||||| | Sbjct 14243 CAAAGAATACATCTCCGAATGAATATTTTCCATCATGATTTGAAAGCCGTAGAAACAACG 14184 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 ||||||| || || ||||| || |||||| | | || |||||||| || || || Sbjct 14183 AGCTTCAGGAAGTTTAACCTCGGAGCAAAATTGCTGTACTAAGTTTTCATTGACAATACC 14124 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA- 40079 || || ||||| || || | ||| | || || | |||||| | | Sbjct 14123 GTCCGCCGCAGCAAAGAACGCAATAACACGACAAACGAAGTGACGTTCATCATTATTGAG 14064 Query 40080 --ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGA 40137 | |||||||||| ||| | ||||| || | ||| |||||||| |||||||||| || Sbjct 14063 AGCTGTATTCCAGTCCTTGTTGTCTTTGGAGAGATCCACTTCTTCCACTGTCCAAAAAGA 14004 Query 40138 CGCCTCTGCCTTTTTGTACATGTTCC 40163 ||| | ||||||||||||| ||||| Sbjct 14003 TGCCACAGCCTTTTTGTACA-GTTCC 13979 >seq1520 Length=48961 Score = 116 bits (128), Expect = 5e-21 Identities = 230/336 (68%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || ||||| | || || | |||||| ||||| || | ||||||| || ||||| ||| Sbjct 6211 CCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 6270 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||| |||||||||| || |||||||| || || || || ||||| | |||| ||| Sbjct 6271 TTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAAT 6330 Query 39758 GCAACAAGTCTCTCTCC----GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 ||||| |||| || | |||||||| ||| | | ||||| | ||||||| | Sbjct 6331 GCAACGAGTCGTTCCGCAAACGTAACTTG-ATCGTCTTCGATCCATCTTAGTGCCCATGC 6389 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT-TTCAT 39872 ||||| | || | ||||| || ||||| |||| | | || | | |||| | ||| Sbjct 6390 CGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACA-AGAATGATCGTTCGA 6448 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 ||||| | ||| || | || | || | || ||||||||||||||||||| | Sbjct 6449 AGGGATCTTGGATATACGTTTGAATCAGCAAAGAGTAAGTTTCTGAATGGATGTTTTCCA 6508 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 || ||| ||||| || || ||| || |||| Sbjct 6509 TCATTGACTGGAATCCATAGAAGGATCGAGCCTCAG 6544 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 39341 ACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAAC 39400 || || || || |||||||| ||||| ||||||| ||||| | |||||||||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 39401 GGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACA 39460 || || | |||| ||| ||| || || | | | || || || ||| |||| Sbjct 5921 GGGTTCCTGACATTGTATAATTTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAATG 5980 Query 39461 AATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCC 39520 || || |||||| | ||||| ||| ||||||||||||| | | |||||| | ||| Sbjct 5981 AACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGCA 6040 Query 39521 TC 39522 || Sbjct 6041 TC 6042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882671706520