Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2556 181 8e-41 seq2440 167 2e-36 seq1520 147 2e-30 seq886 141 7e-29 >seq2556 Length=115598 Score = 181 bits (200), Expect = 8e-41 Identities = 381/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Minus Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790 ||||||| |||||||| |||||| | || || || ||||| | ||||| |||| | | Sbjct 99041 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 98982 Query 43791 CTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTT 43847 || | || | | | |||| | |||||| | || ||||| || | Sbjct 98981 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 98922 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907 || | || || ||||| || ||||| || || || |||||| || | || | Sbjct 98921 ATGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 98862 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 || | | ||||| ||| | | || || || | ||||||||||| ||||| || | Sbjct 98861 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 98802 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA-C 44026 |||| ||||||| |||| ||| ||| || || ||||| ||| |||| ||| | | Sbjct 98801 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTTAATC 98742 Query 44027 GAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAG 44084 | |||| || | || | || ||||||||| |||| ||| || || | ||||| | Sbjct 98741 AACGCGCAT--ATCTCTTCGACGCAATAGAAACAATACCGTGC-ATCAAGCGCAAAGCCG 98685 Query 44085 ACTGGGCCCTTAAATGGATAAATT-CAAATGATTC--TTTTGGAGAACGACTTGTCGCGT 44141 |||||||||| ||||||||| | |||| || | ||||| ||| || | || || | Sbjct 98684 ACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGCAT 98625 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 | || | ||| || || || || ||||| || ||||| || |||| || |||||||||| Sbjct 98624 TCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGA 98565 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 | || || |||||||||| | || | |||||| ||| | || || || |||||||| | Sbjct 98564 AGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAAGGTT 98505 Query 44262 TACATTGCGATTTTGCTTG 44280 ||||| |||||| || || Sbjct 98504 TACATACCGATTTCGCGTG 98486 >seq2440 Length=22844 Score = 167 bits (184), Expect = 2e-36 Identities = 371/544 (68%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| || |||||||||| || ||| || |||||||||| |||||||| ||| | Sbjct 13974 ATTTGGGAACTGTACAAAAAGGCTGTGGCATCTTTTTGGACAGTGGAAGAAGTGGATCTC 14033 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAAC-CACAAGAAAAAC--ATTTTATATC- 43845 | |||||| ||| ||| || | || | | | ||| || | | | | || Sbjct 14034 TCCAAAGACA----ACAA-GGACTGGAATACAGCTCTCAATAATGATGAACGTCACTTCG 14088 Query 43846 TTTG----GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT- 43900 |||| ||| | ||||| ||||||||| ||||| || ||||||||||| || || Sbjct 14089 TTTGTCGTGTTATTGCGTTCTTTGCTGCGGCGGACGGTATTGTCAATGAAAACTTAGTAC 14148 Query 43901 AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATT 43960 || ||||| | || ||| || | || ||||| || ||||| || || |||||||| Sbjct 14149 AGCAATTTTGCTCC-GAGGTTAAACTTCCTGAAGCTCGTTGTTTCTACGGCTTTCAAATC 14207 Query 43961 GCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT--CAAAG 44018 || ||||||||||||||||| ||||| | | || || | || || || | || Sbjct 14208 ATGATGGAAAATATTCATTCGGAGATGTATTCTTTGCTTATCCAAACCTATATTCCCAAC 14267 Query 44019 ATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATA 44078 | | || | || | | || ||| || || ||||| | ||| | ||| ||| Sbjct 14268 ACCGA-ACAACAAA-ACCACTTATTTTCCGCCATCGAAACCATCCCTTCTATTGCCAATA 14325 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCA---AATGATTCTTTTGGAGAACGACTTG 44135 ||||| ||||| | |||||||| |||| ||| || | |||| ||||| || | Sbjct 14326 AAGCAACATGGGCTTTGAAATGGATCGATTCGGCCAATCATACGTTTGCGGAACGGCTCG 14385 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 |||| ||||||| ||| || || | || || || | || ||||| || || || |||| Sbjct 14386 TCGCATTTGCAGCTGTTGAGGGACTCTTTTTCTCTAGTTCATTTGCCGCAATCTTCTGGT 14445 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | |||||| | || | |||||||| | ||||||||||||| | || |||||||||| Sbjct 14446 TGAAGAAAAGGGGGCTTATGCCTGGTCTTTCGTTTTCAAATGAACTCATCAGTCGTGATG 14505 Query 44256 AAGG 44259 | || Sbjct 14506 AGGG 14509 >seq1520 Length=48961 Score = 147 bits (162), Expect = 2e-30 Identities = 296/432 (69%), Gaps = 9/432 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || ||||| |||||| |||||| || || || ||||| ||| | ||| || | Sbjct 6617 GCATTTTTCGCTGCGTCCGACGGTATTGTAAACGAAAACTTGATCCGTCACTTCTCTAGT 6558 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA--ATTGCCATAGAAAATA 43973 ||| |||| | | || || |||| || ||||| || || | || || ||||| | Sbjct 6557 GAAATTCAGGTCGCTGAGGCTCGATCCTTCTATGGATTCCAGTCAATG--ATGGAAAACA 6500 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA-AG 44032 | ||||| |||| ||| | | ||||| | ||||| ||| ||||| ||| | Sbjct 6499 TCCATTCAGAAACTTACTCTTTGCTGATTCAAACGTATATCCAAGATCCCTTCGAACGAT 6440 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 ||| ||||| | | | || ||||| | ||| |||||||| ||||| | ||||| Sbjct 6439 CATTC-TTGTTCAGTTCTATCGAAACGATTCCTTGCATTAAACAAAAAGCGGCATGGGCA 6381 Query 44093 CTTAAATGGATA-AATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 || | |||||| || | | | | | | |||| |||||||| || || || ||| Sbjct 6380 CTAAGATGGATCGAAGACGATCAAGTTACGTTTGCGGAACGACTCGTTGCATTCTCAGCC 6321 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | ||||| ||||| || || ||||| || ||| |||||||||| | || ||||| || Sbjct 6320 ATCGAAGGAATTTTTTTCTCCGGATCTTTCGCGTGCATATTTTGGATCAAAAAACGTGGA 6261 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 || ||||||||||||| |||||||| || | || || ||||||||||| | || | Sbjct 6260 TTATTGCCTGGGTTGACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGAATGCACACC 6201 Query 44270 GATTTTGCTTGC 44281 || ||||| ||| Sbjct 6200 GACTTTGCATGC 6189 >seq886 Length=61200 Score = 141 bits (156), Expect = 7e-29 Identities = 384/579 (66%), Gaps = 29/579 (5%) Strand=Plus/Plus Query 43720 ATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGA 43779 |||| || | ||||||||||||||||| || || |||| || || ||||| || ||||| Sbjct 11941 ATAT-ATCAGATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGA 11999 Query 43780 AGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACA--- 43836 | ||||| | |||||| | ||| || || | | |||| | ||| ||| Sbjct 12000 GATGGATTTATCAAAAGACCTT---CAT--GACTGGA--ACAACCGCCTGAATGACAGCG 12052 Query 43837 -----TTTTATATCTTTGGTTT--TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || | |||| || | | ||||| ||||| || || || || || || | Sbjct 12053 AACGATTCTTCATCTCCCGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTTAACG 12112 Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 | ||| | | || || || | ||||| || | | || ||||| || || || | Sbjct 12113 AGAATCTTCTCGAACGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACG 12172 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 |||| || ||| || || || ||||| || || | ||| |||||| || || || | Sbjct 12173 GGTTCCAGATTATGATGGAGAACATTCACTCTGAGACTTACTCTCTTCTCATCGACACAT 12232 Query 44010 ACATCAAAGA---TGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 |||||||||| || | ||| || || || || |||| || || || | ||| Sbjct 12233 ACATCAAAGACCCTGTCGAACGTGATT--TCCTTT--TTGATGCTATCGAGACCATTCCT 12288 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122 || || | || || || ||||| || ||||| | | | | || ||| Sbjct 12289 TGCATCAAGCGCAAGGCCGAGTGGGCTCTGCGCTGGATCAGTGATGAGCACTCGGTTTTC 12348 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || || || || ||||| | ||| |||||||||||||| || || || || ||| Sbjct 12349 GGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCG 12408 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| |||||| | ||||| || || || |||||||| ||| |||| ||||| ||| | Sbjct 12409 TCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTC 12468 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||||||||| || | ||| ||| || || ||| Sbjct 12469 ATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTGC 12507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441259723215