Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq777 98.7 1e-15 seq2440 96.9 4e-15 >seq777 Length=200876 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||| | ||| || || || || || | ||||||||| |||||| || || Sbjct 114904 TAGATACCTTCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGC 114845 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 || ||||| ||||||||||| || || || || ||| |||| ||| | | |||||| Sbjct 114844 GAAGGGGTACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAA-ATATCGCTCGGACAT 114786 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || |||||| | ||||||| || || || || ||||| || || | |||||||| Sbjct 114785 GAGGTTGTATGTTTGCAAGACATGCTCGATATCGTCTCCGTGTATCCCAACAGCGACCCG 114726 Query 112066 CATGAACATGTACTGTGG 112083 ||||| ||| | ||||| Sbjct 114725 CATGATCATATGTTGTGG 114708 >seq2440 Length=22844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| || || ||||||||||| || | ||||| ||||| || |||| ||| Sbjct 14509 CCCTCATCACGACTGATGAGTTCATTTGAAAACGAAAGACCAGGCATAAGCCCCCTTTTC 14450 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||||||| | || ||| ||||| | ||||| |||| ||||| ||| ||||| Sbjct 14449 TTCAACCAGAAGATTGCGGCAAATGAACTAGAGAAAAAGAGTCCCTCAACAGCTGCAAAT 14390 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC---ATCAAACCATTTCATTGCCCAT 122853 || | || ||||| || || | || || || ||| | |||||||| |||||| Sbjct 14389 GCGACGAGCCGTTCCGCAAACGTATGA---TTGGCCGAATCGATCCATTTCAAAGCCCAT 14333 Query 122854 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 122906 | || || || ||||| | || | |||| |||||| |||||| || || Sbjct 14332 GTTGCTTTATTGGCAATAGAAGGGATGGTTTCGATGGCGGAAAATAAGTGGTT 14280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008111232800